Salpingoeca rosetta: PTSG_00931
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Entry
PTSG_00931 CDS
T04136
Name
(RefSeq) PRP6 pre-mRNA processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
sre
Salpingoeca rosetta
Pathway
sre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTSG_00931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sre03041
]
PTSG_00931
Spliceosome [BR:
sre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PTSG_00931
Complex C
U5 SnRNP specific factors
PTSG_00931
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
PRP1_N
HAT_PRP39_N
TPR_19
HAT_PRP39_C
TPR_16
Suf
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
HAT_Syf1_CNRKL1_C
TPR_CcmH_CycH
TPR_9
ARM_TT21_N
FAT
ARM_TT21_C
TPR_21
DUF4054
Motif
Other DBs
NCBI-GeneID:
16078998
NCBI-ProteinID:
XP_004998404
UniProt:
F2TXX0
LinkDB
All DBs
Position
Unknown
AA seq
926 aa
AA seq
DB search
MSESKDKYFFLHEEGPPGYVGGSGRGAQGFTTRSDIGPARSTERYVVMPLAGGEAKEENL
NESNYDEFSGYGGSLFSKGSYDSEDREADLIYDAVDKRQDERRRQHREQREREELLKYRQ
ERPKIQQQFSDLKRDLSSVSEEEWDKIPDAADIGKKLKRAKRQTQERFTPVPDSLVAGVR
FVWQHSSLDVRQQKYGGLQTPLPGTQTLKPGAVLVVAVVLRGDVDMMEVGAARGTLMRMN
LDQASDSVSGQTVVDPKGYLTDLNSLTPSFSGDIGDVKKGRMLLAAVRKTNPKHGPAWIA
SARLEEEVGRIQTARNLIIKATEKCPKNEDIWLEAIRLQPPEQAKAVVAQAVAAVPSSVK
LWIKAADLESDVKAKRRVLRKGLDTIPDSVKLWKAAVDLESPSDACILLGRAVECCPQSV
DLWLALAHLETYDNARKVLNRARKAIPTERAIWIAAAKLEETAGNEANVGRLISLGIKSL
QGNMVEINRDLWLADAKACDKSGHVQTCQAIVREVINIGVEDEDRLETWLEDAESFVKDE
AYNAARAVYAHCLTAFPANEDLWEQVAFFEKEHGTRESLDEHLRKAVKYCPQAETLWLMG
AKSAWLGGNVPAARNILLHAFTAIPNNEDIWLAAVKLESENNEHQRARGLLERARREAGT
ARVWMKSARLEWVLGNLDAASEMLADAVKLHPTAPKLWMMRGQISEQQDKVEDARQFYAQ
GVKNCPDSIPLWILSARLELAAGQATRARAILERGRLKNPHCPELWLESVDIERQLGQPE
VATAIMAKALQDCPNSGLLWSEAIFMEPRPQRKTKSLDALKRCENDARVLLAVAKLLLSD
RRITKARRWFNRTVKLDPDYGDAWAAYYKFEQLHGDASKQEDVLKHCIAAEPRHGPIWQR
VAKAPHNWGKSQEEILKLVARETKFY
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtccaaggacaagtacttcttcttgcatgaagaaggccctccaggctacgtc
ggtggctctggacgcggtgcgcaaggtttcacaacccgttcagatatcggcccagcccgc
tccacagaacggtacgtggttatgccactcgcgggtggcgaggcaaaggaggaaaacctg
aacgagtccaactacgacgagttcagcgggtacggtggcagcttgttcagcaagggcagc
tacgacagcgaggaccgcgaggcagacctgatctacgacgccgttgacaagcgccaggac
gagcgcaggcgacagcaccgcgagcagcgcgaacgcgaggagctcttgaaataccgccag
gagcgcccaaagatccagcagcagttctccgacctcaagcgcgatctttcgtcagtctct
gaggaggagtgggacaagattccggatgcggccgatattggcaagaagctgaagcgggca
aagcgacagacacaggagcggttcacacccgtcccagactccctcgtcgctggcgtacgt
ttcgtttggcagcacagctcactggatgtgcggcagcagaaatatggtggtctgcagacg
ccgctgccgggaacacagaccctcaagccaggtgcagtgctcgtggtcgcggtggtgttg
aggggcgatgtggatatgatggaggtcggtgctgcgcgtggcaccctgatgcgcatgaac
ctggaccaggcgtccgactccgtgtctggccagacggtcgtcgacccaaagggatacctc
accgacctcaactccctcaccccgtccttcagcggcgacattggtgatgtgaagaaaggg
cgaatgctgctggcggccgtgcgaaagacaaacccgaagcacggccctgcgtggattgcg
tcagcgcgattggaggaggaggtcgggcgcatccagacggcgcgcaacctgatcatcaag
gcaacagagaagtgcccgaagaacgaggacatctggctggaagccatccgcctgcagccg
ccagagcaggccaaggccgtggtggcgcaggccgtggctgccgtgccatcctccgtcaag
ctgtggatcaaggctgcggacctcgagtcggacgtcaaggcgaagcgccgcgtgctcaga
aaagggcttgacacgatccccgactctgtgaagctgtggaaggctgcggtcgaccttgag
tcgccgtccgacgcgtgcatcctccttggccgcgcggtcgagtgctgcccgcagagcgtg
gacctgtggctcgccctcgcccacctcgagacatacgacaacgcgcgtaaggtgctcaac
cgcgcgcgtaaggccattcccacggagcgcgccatctggattgccgccgccaagcttgag
gagacggcgggcaacgaggcaaacgtggggcggctcatcagcctcggtatcaagtccctc
cagggtaacatggtcgaaatcaacagggacttgtggctggcggatgcgaaggcgtgcgac
aagagcgggcatgtgcagacgtgccaggcgattgtgcgtgaggtcatcaacatcggcgtt
gaggacgaagacaggctggagacgtggctggaggatgcagagtcgtttgtcaaggacgag
gcatacaacgcggcgcgcgccgtgtatgcgcactgcctgacggcgttccctgccaacgag
gacctgtgggagcaggttgcattctttgaaaaggagcacggcacacgcgagagtctggac
gagcaccttcgcaaggccgtcaagtactgcccacaggcggagacgctgtggctgatgggc
gccaagtctgcgtggctcggaggcaacgtgcccgctgcccgcaacatcctgctgcacgcg
ttcacggccatcccgaacaacgaggacatctggctggctgccgtcaagcttgagtctgag
aacaacgagcaccagcgtgcgcgcgggctgctggagcgagcgcgacgtgaggccggcact
gcacgcgtgtggatgaagtctgcgcggctggaatgggtgctgggcaaccttgacgcggcg
agcgagatgctggcggatgcggtgaagctgcatccgacggcgcccaagctgtggatgatg
cgcgggcagattagcgagcagcaggacaaggtggaggacgcacgacagttttatgcgcag
ggcgtgaagaactgccccgactccatcccgctgtggatcctctcggcaaggctcgagctc
gcagcaggccaagcgacgcgtgcgcgtgccatccttgagcgcgggcgcctgaagaatccg
cactgccccgagctgtggctggagtccgtggacattgagcggcagctgggacagcccgag
gtggccaccgccatcatggcaaaggcgctccaggactgccccaactccgggctgctgtgg
agcgaggccatcttcatggagccacgcccccagcgcaaaaccaaatccctcgacgccctg
aagcgctgcgagaacgatgcacgtgtgctgcttgcggttgccaagctgctgctgtccgac
cgccgcatcacaaaggcgcgccgctggttcaaccgcaccgtcaagctcgacccggactac
ggcgacgcgtgggcggcgtactacaagtttgagcagctgcacggggacgcgagcaagcag
gaggacgtgttgaagcactgcattgctgcggagccacgacacgggcccatctggcaacgc
gtcgcaaaggcaccacacaactgggggaaatcgcaggaggaaattcttaaacttgtcgcc
cgcgaaaccaaattctattga
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integrated database retrieval system
