Salpingoeca rosetta: PTSG_01280
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Entry
PTSG_01280 CDS
T04136
Name
(RefSeq) DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sre
Salpingoeca rosetta
Pathway
sre03420
Nucleotide excision repair
sre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PTSG_01280
03430 Mismatch repair
PTSG_01280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sre03400
]
PTSG_01280
Enzymes [BR:
sre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PTSG_01280
DNA repair and recombination proteins [BR:
sre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PTSG_01280
MMR (mismatch excision repair)
Other MMR factors
PTSG_01280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
AAA_22
Motif
Other DBs
NCBI-GeneID:
16077846
NCBI-ProteinID:
XP_004997251
UniProt:
F2TZW2
LinkDB
All DBs
Position
Unknown
AA seq
1191 aa
AA seq
DB search
MDDESATQAQPSFKQKVKEEEVKEEVEEDAIKDEATEEEEEGDESKDGMADGGDSSQPAT
QPLAHKAVKEEQGNETKDTRHYQYSQRQLQHLEHQPLEDGGERAPVQPGRLDVTGLNEQQ
CEAVCSTAPALLVLAGPGSGKTRVITSRVAWLLVNDTCSPHGVVLVTFTNKAANEMRTRV
ETLVGREKAAALHMGTFHSIANKFLRKHAAKVGLPSNYTIIDQSDAQRVVEKLMKSHKDA
RQFETLKPRTLLGWISWAKNLGKTPKELNTMAQSAPFPDSSKTTATFLQPYQRHLQNHGF
VDFDDLLIKFNQLLEDHPHVTRFCQHILIDEFQDTNVVQYSIATKLAANANITVVGDPNQ
SIYSWRQAQADGYRKFKRDFAGCQVVGLGRNYRSTEAIVQLSSLCLASQRDTKFWTSNGG
GPPVVFATYNSPMHEARSIAKETARVLQSAKGAITFSNIAVLVRTNAMTRSLEQAFTHVG
IPYVIVGGLKFFDRAEVRDCMAYLKLVHNLHDDISLARIINTPKRGAGPKLMEALEANAL
RNHCSLWDALTKGLQAKRGAPDRIKCPRPTRAALGSLVALIRKHQQGDHSATHVLLDILK
QVQYKEHLESTDKATAASKWENVQELLALTREFEHESHSGNPNDGGDGAGAGGGDGDDDD
GVKAEEEEEQQQRGEDDNLKQQQQQRDDDASDTDDDDDDDDDDDDDDDGDMSKLSSFIEH
VSLYASSDKLERNQSRQDCVTLSTIHSAKGREWAVVFVPGVEDGVLPHSHALDEVQKKGD
SSRLKEERRLLYVALTRAKYYLHMSRCLWRGGAYGYSSENEVSRFISKRMFELVKPSVSD
RTLACTVGILKALVQPRCEVDAAATLKAARAIQKKADAALAAAQARGGGDDDGDDGAGSG
GDAGYGSGSGRFSFLQRSSSSPSHASKRRARFQASGSRGTKGGWSLSAAQQSSSSSFSRA
YSPTASIMTATPAFTSASSFLAEQQQHQQQQQQHQQQRQKATNATSSKGAAAPTKQARPS
LSSSVSAPAADGASASWLSINPAAGFQTAAQFMQTSSFGGGQMPSYQGTVFGNTAAAPEP
SASTASSRGTGRGRGRGKTGRGNTARGKAAAQQKRGGRDIKQEAAADPNATSSNPGTTAS
KKPKTEAQPRQKPTTKRKPTTRKKCTSKMPDALKRLMKQQPAKKQELIVID
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgagtcggccacgcaagcgcagccgtcattcaagcagaaagtgaaggaagag
gaggtgaaggaggaggtggaggaggacgccattaaggatgaagccactgaggaggaggag
gagggcgatgaatccaaggatggcatggcggacggtggcgacagcagccagccagcaacg
cagccactggctcacaaggcggtgaaggaggaacaaggcaacgaaacgaaggacacacga
cattatcagtattcacagcggcaactgcagcatttggagcatcagccgttggaggatgga
ggggagcgcgcaccagtacagccgggccgattggatgtgactgggctgaatgagcagcag
tgtgaggcggtgtgctcgacggcgccggcgctgctggttctggcgggaccagggtccggc
aagacgcgcgtcatcaccagccgcgtggcgtggctgctcgtgaacgacacttgctcgccg
cacggcgtggtgctggtgacgttcaccaacaaggctgccaacgagatgcgcacgcgcgtg
gagacgctggttggccgcgagaaagcggccgccctgcacatgggcaccttccactccatt
gccaacaagtttctgcgcaagcacgcggccaaggtgggcctgccctccaactacaccatc
atcgaccaaagcgacgcccagcgcgtcgtggagaagctcatgaagagtcacaaggatgca
cggcagtttgaaacgctcaagccccgcaccttgctgggctggatctcttgggccaagaac
ctcggcaagaccccaaaggagctcaacaccatggcacagagcgccccatttccagacagc
agcaagacgactgcgacgttcctacagccgtatcagcggcacttgcagaaccacggcttt
gttgactttgatgatttgctcatcaagttcaaccaactgcttgaagaccacccacatgta
acccgcttctgccaacacattctcatcgacgagtttcaggacacgaacgtcgtgcagtac
tccattgccacgaaattggccgccaacgcaaatatcaccgtcgttggggatccaaaccaa
tccatctacagctggcggcaggcgcaggcggacgggtaccgcaagttcaagcgggacttt
gctgggtgtcaggttgttggacttggccgcaactaccgctccacagaggccattgtccaa
ctgagctcgctctgcctcgcctcccagcgcgacaccaagttctggacatcaaacggcggg
gggccacccgtcgtctttgccacatacaactctccgatgcacgaagcacgctccatcgcc
aaggaaacggcgcgggtgttgcagtctgcaaaaggagccatcaccttcagcaacattgcc
gtgttggtgcgaaccaacgccatgacccgaagcctcgaacaggcgttcacgcacgtgggc
atcccgtatgtgattgtgggcggcctgaagttctttgaccgcgcggaggtgcgcgactgc
atggcctacctcaagcttgtgcacaacctgcacgacgacatctcccttgcccgcatcatc
aacaccccaaagcgcggcgcaggcccaaagctgatggaggccttggaggcaaacgccctg
cgcaaccactgctccctgtgggacgccctcaccaaaggcctgcaggcgaagcgaggcgcg
cccgacaggataaagtgcccgcggccaacgcgtgctgcgctggggtcgctggtggcgctg
atcaggaagcaccaacagggggaccactcggccacacacgtgctgctggacattctcaag
caggtgcagtacaaggagcacctggagagcacggacaaagctaccgccgcgtccaagtgg
gagaacgtgcaggagttgctcgccctcacccgcgaatttgaacacgaatcgcacagcggc
aaccccaacgatggtggcgacggcgccggtgccggtggtggcgacggtgacgatgacgat
ggtgtgaaggcggaggaggaggaggagcagcagcagcgaggagaagacgacaacttgaag
caacaacagcagcaacgtgacgatgacgcaagtgacaccgatgacgatgacgatgacgac
gatgacgatgatgacgacgacgatggtgacatgtcgaagctgagcagtttcattgagcac
gtgtcgctgtatgcgagctcggacaagctggagcgaaaccagagcaggcaggactgcgtg
acgctgagtacgatccactctgccaagggccgggagtgggcggtggtgtttgttcctggc
gtggaggatggcgtgctgccgcactcgcatgcgcttgatgaagtgcagaagaagggcgac
agcagccggctcaaggaggagcgccgcctcctctatgttgcgctgacgcgggccaagtac
tacttgcacatgtcgcggtgcctgtggaggggcggggcgtacggctacagcagcgaaaac
gaagtgagccgcttcatctccaagcgcatgttcgagctcgtcaagccgtctgtgtccgac
cgcacgcttgcgtgcacggtgggcatcctgaaggcgctggtacagccgcggtgcgaagtg
gatgctgcggcgacgctcaaggccgcgcgcgccatccaaaagaaggcggacgctgctctg
gcagcggcccaggcgaggggcggtggcgatgacgatggcgatgatggtgctggcagtggc
ggcgatgctggctatggcagtggtagtgggaggttttcgtttctgcagcggtcatcctcc
agcccatcgcacgcgtcgaagcggcgtgcgcggttccaggcgtccggcagccggggcacc
aaaggcggctggagcctgtctgccgcccagcaatcgtcgtcgtcttccttctcgagggcg
tattcgccaaccgcgtccatcatgaccgccaccccggcctttacatcggcatcttcgttc
ctggctgaacagcagcagcaccaacagcagcagcagcagcaccaacagcagcgacaaaag
gcaacaaatgcgacatcatcaaagggagcggcggcaccaacaaagcaggccaggccgtcc
ctttcttcctccgtctccgcgcctgctgctgacggcgccagcgcgtcctggctctccatc
aacccggcggcagggtttcagaccgccgcgcagtttatgcagacgtcctcgtttggcggc
gggcagatgccctcgtatcaaggcaccgtctttggaaacacggcggcagcaccagaacct
tctgcatccacagccagcagccgaggcacgggacgaggcagaggcaggggcaaaacgggc
aggggtaacacggccaggggcaaggccgcagcacaacagaagcggggtggacgcgacatc
aagcaggaagcggctgccgacccgaacgccacctcgtcaaatcccggcaccaccgccagc
aagaagccaaagacggaggcacagccgaggcagaagccaacaacaaagaggaaacccaca
acaaggaagaagtgcaccagcaagatgcccgacgccctcaagcgtctcatgaagcagcag
ccagccaagaagcaggagctcattgtcattgactga
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