KEGG   Salpingoeca rosetta: PTSG_01531
Entry
PTSG_01531        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K06100  symplekin
Organism
sre  Salpingoeca rosetta
Pathway
sre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PTSG_01531
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sre03021]
    PTSG_01531
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_01531
Transcription machinery [BR:sre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PTSG_01531
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     PTSG_01531
    U7-dependent histone pre-mRNA processing factors
     PTSG_01531
SSDB
Motif
Pfam: SYMPK_PTA1_N Symplekin_C Cnd1 HEAT_2
Other DBs
NCBI-GeneID: 16078104
NCBI-ProteinID: XP_004997509
UniProt: F2U0M0
LinkDB
Position
Unknown
AA seq 1084 aa
MSDVHTQVVALLNELHASTRKVDKVNRLRDVEEFVVRKDPGLLDSFFDELIQTQTDAEPA
VRVQLISLLEAACLQDTAIIARALPTLEYLLADETPVVVKRAVRCCANITRQCFAQAAPH
GINRHPSHEAAWAACIKLKAQVLALRADKNPGVSSHVFHFMETLVLLFSYRTRGSVGTQQ
TDASLDLVAPEHPFLNTAKLRKQGRILFSTLVTSLLASHDISSVLAGTITTSLTSIAERR
PVFMGPVLATLVRILDEPPIHFSMSAVRSMRRTLRAQLLILFKHEASAEFHDELVPRLEG
LGVAQRDINDYDKRSEVRARPLDGFLPKDIETAVAADEAVVDEDEKMQGEETKEQEGGGE
GEGEGGGEGEGEEKKEEEKKEEEGEEQLSALEKAAQEQMAKYPFEKLKATLSLDSLVDLV
ITSLLALPDELPTGDAELTARAHRAPKHETRQTERQRGDVREAIRKDEVETSLAPALPMA
PRPDNKPKKTKPVVTPSRPGAKRFALRPVTLSAAAKQRLCMAAFRRILNSACNGGRRGVR
ARMSTFATVACQMLSGQAVDGAAVKGTDPMTKETLEVVGSNPVARADFINTWLFHEWWQA
VQRQQQGDGNSDVGAGGVGDSREKETARVKEEEEVGDQASQQASGGGGGGGGGDGGESVV
AKEEAPVHMDTSTDATTTTTAAAASSALGKQNSGGSGQSDGVFGRYDACAMACLQALLTQ
LPMSEAAVTRLLSDCPRVSSAMVANVTAIIPTDESDEDDPQLRFALLTLRSLALKREDCR
EACLQALLSSCTSRSETLGTAATSTSLQLFETAPEAMRDSILSFAENAMLAALRTTEVDQ
AAKTAVAAQCRLFFQLVLTRVHKFNSLVQGYATATPSAKRALLSILQHPVSEMRRREPTA
FFEALLHFPHNAESLVLRALHTICDAEEAKRKVSAEARACAMALYEKTHDVRFLIPIISA
LTQTQLEDHLAEFLSLPARVVKQVMQRLLKPTCRLDPPTLLLQLHKLEPAGALKISNIIV
AVDACFQRRDVYTQPLLSTVLEQLAELSPPPRLLMRTASPDLAAQLKTYCGEHTDSPLAK
LVQA
NT seq 3255 nt   +upstreamnt  +downstreamnt
atgtcggacgtgcacacccaggtggttgcgctcttgaacgagctgcacgccagcacacga
aaggttgataaagtcaaccgcctgcgcgatgtggaggagtttgtcgtgcgaaaggacccg
ggcctcttggacagcttcttcgacgagctgatccagacccaaacagatgcagagccagcc
gtcagagttcaactcatcagtttgctcgaagcagcctgtctccaagatacggccatcatt
gcacgggccctgccgacccttgagtacttgcttgcagacgagacacctgtggtcgtgaag
cgggccgtgcgctgctgcgccaacatcacccgccaatgctttgcccaagctgcgccccac
ggcatcaaccggcatccaagtcacgaggcggcgtgggctgcttgcatcaagctcaaggca
caggtgctggcgctgcgtgcagacaagaacccgggcgtgagcagtcacgtgtttcacttt
atggagacacttgtgctgctgttctcctatcgcacgcgcggcagtgtgggcacccagcag
acggatgcctcgcttgatttggttgcgcccgaacacccatttctcaacacagccaagctg
cgcaagcaaggccgcatcctgttcagcacgctggttacgagcctgcttgcatcgcacgac
atctcgagcgtgcttgcaggcaccatcaccaccagcctgacctccattgctgagcggcgc
cccgtgttcatgggccccgtcctggccacccttgtccgcatcttggacgagccgccaatc
cacttctcaatgagtgccgttcgcagcatgcgcaggacactgcgggcgcagctgctgatt
ctcttcaaacacgaggcatctgcggaattccacgacgagcttgtgccgcggctggagggc
ctgggcgttgcacagcgtgacatcaacgactacgacaagcggtcggaggtgcgggcgcga
ccactggacgggtttctgccgaaggacattgagacagcggtggcggctgacgaggcagtg
gtggatgaggatgagaagatgcagggggaagagacgaaggagcaagagggtggaggtgag
ggtgaaggtgaaggtgggggtgaaggtgaaggtgaagagaagaaagaagaagagaagaaa
gaagaagagggggaagagcagttgtcggcactggaaaaggcggcacaggagcaaatggca
aagtatccgtttgaaaagctcaaagcgacactgtcgctcgattcgctcgtcgacctcgtc
atcaccagtctgcttgcgctgcccgacgagctgccgacgggcgacgcagaactcacagcg
cgcgcacacagagcgcccaagcacgagacgcgacaaacggagcggcagcgtggagatgtg
cgggaggcgattcgcaaggacgaagtcgagacgtccctcgccccagccctccccatggcc
ccaaggccagacaataagcccaagaagaccaaacctgtggtgacgccatcacgaccggga
gcaaaacgctttgccctccgccccgttacactcagcgcagcggccaagcaacggttgtgc
atggctgcatttcgtcgcatactcaacagcgcgtgcaatggcggtcgaaggggtgtgcgt
gcgcgtatgtccacgttcgccaccgtcgcctgccagatgctgtcgggacaggccgtggat
ggtgcagcggtcaagggcacggaccccatgaccaaggaaacgctggaagtagtcggttcg
aatcccgttgcgcgggcggactttatcaacacgtggctgttccacgagtggtggcaggct
gtgcagcggcaacaacagggcgatggcaacagtgacgttggcgctggtggcgttggtgac
agtcgtgagaaggaaactgcacgtgtcaaggaagaggaggaggtgggagatcaagcttcg
cagcaagccagtggtggtggtggtggtggtggtggtggtgatggtggcgagagtgtggtg
gcaaaggaagaggcgcctgttcacatggacacatccacggacgcgacgacaacaaccacc
gcagctgctgcttcgtcggcgctaggaaagcagaacagtggtggcagtggacaaagtgat
ggcgtgtttgggcggtatgacgcgtgtgcaatggcgtgcctgcaagcactcctgacgcaa
ttaccgatgagcgaggcggcggtcacgcgcttgctgtctgattgcccgcgtgtgagcagt
gccatggttgccaacgtgacagcgatcatccccacagatgagagtgatgaggatgaccca
cagttacggtttgcgctgttgacactgcggtcgcttgctctcaagcgcgaggattgcaga
gaggcgtgcttgcaggcattgttgtcgtcgtgcacgtctcgctccgaaacgctcggcacc
gccgcaacctcaaccagcttgcagctcttcgagacggcgccagaggcaatgcgagacagc
atcctctcctttgctgagaacgcaatgctcgccgcgctgagaacgactgaagttgatcag
gcagcgaagaccgctgttgccgcgcagtgccgcctcttcttccagctcgtcctcactcgc
gtccacaagttcaacagccttgtgcaagggtacgccaccgccacaccctctgccaagcgc
gctctcctctccatccttcagcacccggtgtctgagatgcgacggcgcgagcccaccgcc
ttctttgaagcgctgctccacttcccccacaacgccgaatccctcgtcctccgcgccctc
cacacaatctgcgacgcagaagaagcgaagcggaaagtgagcgctgaagcgcgcgcgtgt
gcaatggcgctgtacgagaagacacatgacgttcggtttctcattccaatcatctcagca
ctcacacagacgcaacttgaggaccacctggccgagtttctcagtctgcccgcacgcgtc
gtcaagcaagtcatgcagcgtctactcaagccaacatgccgtcttgatccgccaacgctg
cttctccaactccacaagctcgagccagcaggagcgctcaaaatttcgaacatcattgtt
gctgtggacgcgtgcttccagcgacgggatgtgtacacgcagccactgctgtcgactgtt
cttgagcagttggccgagctctccccgccaccgcgtcttctcatgcgcaccgcatcgccg
gaccttgctgcccagctcaagacgtactgtggcgaacacacggacagcccactggcgaag
ctggtccaagcgtag

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