Salpingoeca rosetta: PTSG_02173
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Entry
PTSG_02173 CDS
T04136
Name
(RefSeq) DNA-directed RNA polymerase II subunit J
KO
K03008
DNA-directed RNA polymerase II subunit RPB11
Organism
sre
Salpingoeca rosetta
Pathway
sre03020
RNA polymerase
sre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PTSG_02173
09124 Replication and repair
03420 Nucleotide excision repair
PTSG_02173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sre03021
]
PTSG_02173
03400 DNA repair and recombination proteins [BR:
sre03400
]
PTSG_02173
Transcription machinery [BR:
sre03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PTSG_02173
DNA repair and recombination proteins [BR:
sre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PTSG_02173
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_L_2
RNA_pol_L
DDHD
DUF4407
Paf1
Pet20
AAA_23
PIP5K
API5
DUF4746
Hid1
SLC12
HAM1_N
CPSF100_C
DUF4820
FAM60A
RR_TM4-6
eIF-3_zeta
CDC45
Motif
Other DBs
NCBI-GeneID:
16077252
NCBI-ProteinID:
XP_004996658
UniProt:
F2U1F2
LinkDB
All DBs
Position
Unknown
AA seq
202 aa
AA seq
DB search
MNAPETFDRILLAPGEQKVTYTPDTKVPNAGTFRINREDHTLGNMLASQLRRDPRVLFSG
YRCPHPLEHHLLLRIQTTPDYSPKEALKTALADCRADITRMTHEFETEVKPPQICSQPRP
QYHQQFKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQPREQ
HTHPFHRPSTVTQGPKNKGQPP
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctcctgagacgtttgaccgcatcttgctggctccgggtgagcaaaaggtcacc
tacacgccagacacaaaagtgccaaatgccggcacgttccgcatcaaccgcgaagaccac
accctcggaaacatgcttgcaagccaactccgcagagatccacgcgtcttgttctctggc
taccgctgccctcatcctctggaacaccatcttttgctcagaatacagacaacgccagat
tattcgcccaaagaagcgttgaaaacggcgcttgcagactgccgcgccgatatcacgcgc
atgacacacgagtttgagacggaggtgaaaccgccacagatatgctcgcaaccaaggcca
caataccaccaacaatttaaacaacaacaacaacaacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacagcagcagcagcagcagcagcagcagcagcagcagcagcaa
caacaacaacaacaacaacaacaacaacaacaacaacaacaacttcaaccacgagaacaa
catacgcacccatttcaccgaccatcaacagttacacaagggcccaagaataagggccaa
ccgccatga
DBGET
integrated database retrieval system
