Salpingoeca rosetta: PTSG_02289
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Entry
PTSG_02289 CDS
T04136
Name
(RefSeq) DNA-directed RNA polymerase II polypeptide
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sre
Salpingoeca rosetta
Pathway
sre03020
RNA polymerase
sre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PTSG_02289
09124 Replication and repair
03420 Nucleotide excision repair
PTSG_02289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sre03021
]
PTSG_02289
03400 DNA repair and recombination proteins [BR:
sre03400
]
PTSG_02289
Enzymes [BR:
sre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PTSG_02289
Transcription machinery [BR:
sre03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PTSG_02289
DNA repair and recombination proteins [BR:
sre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PTSG_02289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
16077371
NCBI-ProteinID:
XP_004996778
UniProt:
F2U1S2
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MEWAEDPQYVGDISSQEWPQGCWDVINAYFNEKGLVRQQLDSFDHFIQYGIQDAVEKSPA
LEIEAKPQYTTNEFEEPPSYSVKFCEVSLSKPTHYEEDGTSHFLYPNDARLRNLTYWSEM
FVEAEETYRETQDSEPETTTTSVHLGKIPIMLRSKFCLLNGKLNDDLYNLNECPLDPGGY
FIINGSEKVLLAQEKMAPNTVFVFEKKDPKYLFVTEIKSVLERSPRPPSSLLVKLLRGSQ
SAARSGPVLHVTLPYVRQDVPVVVVFRALGFEDDRSILEHIIYDFNDMEMMEMLKPSLDE
AFVIQNRDVALDWIGKRAVQSPAISKERRIHYAKDILQKELLPHIGLGPHCETKKAFFLG
YMVHRTLQAALRRRQLDDRDHYGNKRLDMSGPLTGFLFRTLFRNVTKELRSYIQKKLNRS
EEIKLSAGLNSKQIESGLRYSFATGNWGTQAKAFEARAGVSQVLNRLTFASTLSHLRRLN
SPIERTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLALMASVTVGGDATPVLELLN
SIGMESLDDLASRSVIRDTTKIFVNGAWVGIHMEPEEVVRNLHLCRRTQADMIQSEVSIF
RDIREREIHVYSDSGRLTRPLLIVEKPELDDTFHDGTQQQQTLALKKQHLEKLQSAAMQN
AFEATYSWSDLVREGLVEYIDVNEEDTTMIAMTPDDFEMSDEQDLYCTTYTHCEIHPSMI
LGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFHIRLDTLAHVLYYPQQPLVKTRS
MDYMYFKDLPAGINAIVAIMCYTGYNQEDSVIMNKCAVDRGLFRSVFYRSYASSEENTGR
EVIKFEKPSRETCAGMRNSNYGKLEDDGLIAPGTSVTGDDAIIGRTMELPPNAEARDSRL
ARFEKLDKSVFLRASENGIIDQVMVAMGPKGTRFVKIRVRSIRVPQIGDKFASRHGQKGT
CGMQYSQEDMPFTCQGITPDIIVNPHAIPSRMTIGHLIECLLGKVGCLEGAFGDATPFIE
VTVNEVASALEAHNFHKYGNEVLYNGFTGRKMQAQVFFGPTYYQRLKHMVDDKIHARARG
PLQILTKQPVEGRSRDGGLRFGEMERDCMIAHGSAQFLRERLFEVSDPYRIHVCDICGLI
CIANLNKNELECKACSNTTRVSQVRIPYACKLLFQELMSMCIAPRIMTDNSHA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggctgaagatcctcaatatgtcggagacatctcgtctcaggagtggccgcag
ggatgctgggacgtgatcaacgcatacttcaacgagaaaggtcttgtgcggcagcagctt
gactcgttcgaccactttatccagtacggcatccaggacgccgtggagaagagccctgct
ttggagattgaggcaaaaccccagtacacaaccaacgagtttgaagagccgccgagctac
agcgtcaagttctgcgaagtgtctctcagcaagcccacacattacgaggaggacggcacg
agccatttcctgtaccccaacgacgcgcgcttgcgcaacttgacgtactggtcggagatg
tttgtcgaggccgaggagacctatcgcgagacacaggacagcgagccagagacgaccacg
acgtctgtgcatctcggcaagatcccgattatgctgcgctccaagttctgtcttctcaac
ggcaagctaaacgacgacctgtacaacctcaacgagtgcccgctcgaccccggtggctac
ttcatcatcaacggctcagagaaggtgctgctggcacaggagaagatggcgccaaacacc
gtcttcgtctttgagaagaaggatccaaagtatctctttgtgacggaaatcaagtccgtg
ctcgagcgcagcccgcgcccgccaagttcgttgcttgtgaaactgctgcggggatcacag
agcgctgcccggagcggccccgtgctgcacgtgacactgccgtatgtgcggcaggatgta
ccggtggtcgttgtgttccgcgcgctcggatttgaggacgacaggtccattttggagcac
atcatctacgacttcaatgacatggagatgatggagatgctcaagccgtcgctggacgag
gcgtttgtcatccagaacagggacgttgctctggactggattggcaagcgcgctgtgcag
agcccggccatctccaaggagcgccgtatccactacgcaaaggacattctgcagaaggag
ctcctgccccacattggcctcggcccacactgcgagacgaagaaggcgtttttcctcggc
tacatggtgcaccgcacgctgcaggctgccctgcgccgccgccagctcgatgacagagac
cactatggcaacaagcgtcttgacatgtctggcccgctcacgggctttctcttccgcact
cttttccgcaacgtcacaaaggagctgagaagctacatccagaagaaactcaaccggagc
gaggagattaagctcagtgccggcctcaactcaaagcagattgagagtgggcttcggtac
tcgtttgcgacgggtaactggggcacgcaagccaaggcctttgaggcacgcgctggcgtg
tcgcaggtgctgaacaggctcacgtttgcctccacgctctcgcacctccgccgcctcaac
tcgcccattgagcgcacgggcaagattgccaagccacggcagctgcacaacacccactgg
ggatacatctgccctgcagagacaccggagggccacgctgttgggctggtgaagaacctt
gcgctgatggcgtcggtgacggttggcggcgacgcaacacctgtgcttgagctgctcaac
tccattggcatggagagccttgatgacctcgcatcaagatccgtcatcagggatacgacg
aagatctttgtgaacggcgcgtgggttggcatccacatggagcccgaggaagtggtgcgg
aacctgcacctctgccgccgcacacaggccgacatgattcagagcgaggtctccatcttc
agggacatccgcgagcgcgaaatccacgtctactcagactctgggcggttgacgcggccg
ctgctgattgtggagaaacccgagttggatgacacgtttcacgatggcacacagcagcag
cagacactcgccctcaagaaacagcaccttgagaagctgcagagcgctgcgatgcagaat
gcgtttgaggcgacatactcttggagcgatctcgtgcgcgaggggctggtcgagtacatt
gacgtcaacgaagaagacaccaccatgattgcaatgacgccggacgatttcgagatgagc
gatgagcaggacctgtactgcacgacgtacacgcactgcgagatccacccgagcatgatt
ctcggcatctgcgcgtccatcatccccttccccgaccacaatcagagtccccgtaacacg
taccaatctgccatgggcaagcaggccatgggcatctacaccacaaacttccacatccgc
ctcgacacgctcgcccacgtcctttactatccacagcagccgctcgtcaagaccaggtca
atggactacatgtacttcaaagatttgcctgcaggcatcaatgccattgttgccatcatg
tgctacacgggctacaaccaagaggattccgtcatcatgaacaagtgcgccgtcgaccgc
ggcctcttcaggtctgtcttctaccgctcgtacgcgtcatcggaggagaacacgggccgc
gaagtcatcaagtttgagaagccctcccgggagacgtgcgcaggcatgcgcaactcaaac
tacggcaagcttgaggacgacgggctgattgcgccggggacgagcgtgactggcgacgat
gccatcatcggccgcaccatggagctcccgcccaacgcagaggcgcgcgacagccgcctt
gcccgctttgagaagctcgacaagagcgtgttcctgcgcgcgagcgagaacggcatcatt
gaccaggtcatggttgccatgggaccaaaggggacccgctttgtcaagattcgtgtccgc
tccatccgcgtgccacagattggtgacaaatttgccagtcgccacggacagaagggtacc
tgcggaatgcaatacagccaggaggacatgccgttcacctgccagggcattacgcctgac
atcattgtgaacccgcacgccattccgagccgtatgaccatcgggcacttgattgaatgt
ctgctgggcaaggttggctgcctggagggtgcatttggcgacgcaacgcccttcatcgaa
gtcaccgtcaacgaagtcgccagcgctctcgaggcacacaactttcacaagtacggcaac
gaggtgctgtacaatggctttacggggcgcaagatgcaggcgcaggtgttctttgggccc
acgtactaccagcgcctcaagcacatggtcgatgacaagattcacgcccgcgcccgcggt
ccgctgcagattctgacaaagcagcccgtcgagggtcggtcgcgtgatggtggccttcgc
tttggtgaaatggagcgtgactgcatgattgcgcacgggtctgcccagttccttcgggag
cgcctgtttgaggtgtcggacccgtaccgcatccacgtctgcgacatctgcggcctcatc
tgcatcgccaacctcaacaagaatgagctggagtgcaaggcctgcagcaacaccaccagg
gtgtcacaagtgcgcatcccatacgcgtgcaagctgctgttccaggagctcatgtccatg
tgcattgcacctcgcattatgacagacaactcccatgcttag
DBGET
integrated database retrieval system
