Salpingoeca rosetta: PTSG_02420
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Entry
PTSG_02420 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_02420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_02420
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PTSG_02420
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PTSG_02420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N
Motif
Other DBs
NCBI-GeneID:
16077505
NCBI-ProteinID:
XP_004996913
UniProt:
F2U257
LinkDB
All DBs
Position
Unknown
AA seq
178 aa
AA seq
DB search
MTEDKKHDAGDAAGHVLVTPGTRLAPQSTHVAGEGTYLRDGYIYASLVGQRVETKKPEDS
KDTKPVISIHRPGQIASLVPTVGTVVTCKVISMNPRFAKTKILCVGAVPLQQSFSGIIRC
VDETCWVDGDGMPKDKGEADMCDDHAGSQEQRKVALIAEEDTAEEDSDRAMDTSTTTS
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggacaagaagcacgatgctggcgatgctgctggccatgtgctggtgacgccg
ggcacgagactggcaccccaaagcacacacgtagcaggagaagggacgtacttgcgggac
ggatacatctacgcatcactggtaggacagcgggtggagacaaagaagcctgaggacagc
aaagacacaaagccggtcatctcaatccatcgaccaggccaaattgcttccctcgtgccg
actgtgggcaccgtcgtcacatgcaaggtcatatccatgaatcctcgctttgcaaagaca
aagatcctgtgtgtgggcgcagtaccactgcaacaatcgttttcaggcatcatccggtgt
gttgatgaaacctgttgggttgatggagatggaatgcccaaagacaaaggcgaggctgac
atgtgtgacgaccacgctgggtcacaggagcagcgaaaggtcgcgctgattgcggaagag
gacacggcggaagaagacagcgatcgagccatggataccagcaccaccacgtcgtaa
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