KEGG   Salpingoeca rosetta: PTSG_02420
Entry
PTSG_02420        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K07573  exosome complex component CSL4
Organism
sre  Salpingoeca rosetta
Pathway
sre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTSG_02420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_02420
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PTSG_02420
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     PTSG_02420
SSDB
Motif
Pfam: ECR1_N
Other DBs
NCBI-GeneID: 16077505
NCBI-ProteinID: XP_004996913
UniProt: F2U257
LinkDB
Position
Unknown
AA seq 178 aa
MTEDKKHDAGDAAGHVLVTPGTRLAPQSTHVAGEGTYLRDGYIYASLVGQRVETKKPEDS
KDTKPVISIHRPGQIASLVPTVGTVVTCKVISMNPRFAKTKILCVGAVPLQQSFSGIIRC
VDETCWVDGDGMPKDKGEADMCDDHAGSQEQRKVALIAEEDTAEEDSDRAMDTSTTTS
NT seq 537 nt   +upstreamnt  +downstreamnt
atgacggaggacaagaagcacgatgctggcgatgctgctggccatgtgctggtgacgccg
ggcacgagactggcaccccaaagcacacacgtagcaggagaagggacgtacttgcgggac
ggatacatctacgcatcactggtaggacagcgggtggagacaaagaagcctgaggacagc
aaagacacaaagccggtcatctcaatccatcgaccaggccaaattgcttccctcgtgccg
actgtgggcaccgtcgtcacatgcaaggtcatatccatgaatcctcgctttgcaaagaca
aagatcctgtgtgtgggcgcagtaccactgcaacaatcgttttcaggcatcatccggtgt
gttgatgaaacctgttgggttgatggagatggaatgcccaaagacaaaggcgaggctgac
atgtgtgacgaccacgctgggtcacaggagcagcgaaaggtcgcgctgattgcggaagag
gacacggcggaagaagacagcgatcgagccatggataccagcaccaccacgtcgtaa

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