KEGG   Salpingoeca rosetta: PTSG_02477
Entry
PTSG_02477        CDS       T04136                                 
Name
(RefSeq) Nle1 protein
  KO
K14855  ribosome assembly protein 4
Organism
sre  Salpingoeca rosetta
Brite
KEGG Orthology (KO) [BR:sre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sre03009]
    PTSG_02477
Ribosome biogenesis [BR:sre03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    PTSG_02477
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_EML WD40_MABP1-WDR62_2nd ANAPC4_WD40 DSE1_N Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd ASA1 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR75_1st WDR90_beta-prop_4th NLE Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_NOL10_N Beta-prop_DCAF12 eIF2A PAC11 CFAP251_N Beta-prop_WDR35_TULP_N Tricorn_N Tricorn_2nd Beta-prop_DCAF4 Beta-prop_HPS5 RMC1_N Beta-prop_IP5PC_F Ig_CFAP65_4th TRM82_WD
Other DBs
NCBI-GeneID: 16077560
NCBI-ProteinID: XP_004996968
UniProt: F2U2B2
LinkDB
Position
Unknown
AA seq 504 aa
MQTQTQTGHTNTEHTHTRARDMASYKKAKLQAKLEEEKKHEHVRVLVQLVNEEGEEACQP
IELSSETTPAQLQMLCNEILEEEDPAPYAFYVKDKEITTDILDIMNTTGVSSEEVVRVVY
QPQAVFRVAGISQCSGTIPGHADNIVDVAFSPDGNSLASGSGDQTVRFWDVFTATPRKTC
KGHKSWVQCVAWSPDSQLLASGSRDCEIRVWKADRASPACAPLKGHRKYVTWLSWEPMHT
SKHKVSTRLASASADGTVKIWDVSVGRCLMTLSQHTKAVKCVVWGGEGMIYTASQDTTIK
AWRAHDGAMAWSMKGHAHWVNCLSLSTDHALRTGAFNERGVIEGDITETSLKRYNEAKGQ
KELMVSASEDHTLFLWEPSKSKKPICRMTGHQRPVNYAKFSPDGRWIVSCAFDRSARVWN
RKGEFVATLRGHVGPVFRCAWAPDSRMFITASEDSTLKLWQTKDTKLSRDLPGHEGSVFA
VDWCPTGSIVASGGADKMLKIWRR
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgcaaacacaaacgcaaacaggacacaccaacaccgaacacacacacacgcgcgcgaga
gacatggcgtcgtacaagaaggccaagctccaggccaagctggaggaggaaaagaaacac
gagcatgtgcgagtgctggtacagcttgtgaatgaggaaggagaggaagcatgtcagcca
atcgagttgtcatcagagaccacaccagcacagctccaaatgctgtgcaacgagatcctc
gaagaggaggatccagcgccgtatgcattctatgtcaaggacaaggagatcacaaccgac
attcttgacatcatgaacacaaccggtgtatcctctgaggaagtggttcgagtcgtgtat
cagccccaggctgtcttccgtgttgccggtatctcgcaatgcagcggcaccattccaggg
catgcggacaacattgtcgatgtggcattcagtcccgatggcaactcgctcgcgagcggc
agtggtgaccaaaccgtccgtttctgggatgtgttcacagcaacaccacgcaagacatgc
aaaggacacaagagctgggtgcagtgtgtggcatggtcgcccgattcacagctgcttgcg
tccggcagccgcgactgcgagattcgcgtgtggaaagcagatcgcgcatcgcccgcctgc
gcaccgctgaaggggcacaggaaatacgtcacatggctgtcgtgggagccaatgcacacg
tcgaaacacaaagtctccacacggcttgcatcagcgtcagcggatggcacggtgaagata
tgggatgtgtctgttgggcgatgcctgatgacgctgtcgcagcacaccaaggcagtcaag
tgcgttgtgtggggcggtgaaggcatgatctacacggcatcgcaggacaccaccatcaaa
gcgtggcgggcacacgacggagcaatggcatggtccatgaagggtcatgcgcattgggtg
aactgcctttctctcagcacagaccacgccctcaggacgggcgccttcaacgagcgtggc
gtcatcgagggcgacatcacggagacgagtctcaagcggtacaacgaagcaaaaggacag
aaggaactcatggtctccgccagcgaggaccacacgctgttcctttgggagccgagcaag
agcaagaagcccatctgccgcatgactggccaccagcgacccgtcaactacgcaaagttc
agcccagacgggcgctggatcgtcagctgtgcgtttgaccgctctgcccgcgtgtggaac
cgcaagggcgagtttgttgccacgctgcgtgggcatgtcggaccggtcttccggtgcgcg
tgggcgccagactcgcgcatgttcatcacggcaagcgaggacagcacgctcaagctgtgg
cagacgaaagacacaaagctgtcgcgagacctgcctggccacgagggctctgtgtttgct
gtggactggtgcccaactggctcgattgtggccagcggcggcgcagacaagatgctcaag
atctggcggcgctaa

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