KEGG   Salpingoeca rosetta: PTSG_03422
Entry
PTSG_03422        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
sre  Salpingoeca rosetta
Pathway
sre03022  Basal transcription factors
sre03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PTSG_03422
  09124 Replication and repair
   03420 Nucleotide excision repair
    PTSG_03422
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sre03021]
    PTSG_03422
   03400 DNA repair and recombination proteins [BR:sre03400]
    PTSG_03422
Transcription machinery [BR:sre03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PTSG_03422
DNA repair and recombination proteins [BR:sre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PTSG_03422
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 16076595
NCBI-ProteinID: XP_004996008
UniProt: F2U556
LinkDB
Position
Unknown
AA seq 311 aa
MSSLFVLIVDLHPARWKQLSEDASLDEAMNQICVFLNAQLSVHVSNTIAVIGAAPKKSMF
LYPSAVKMPSPDDRQELFSEMNATILANATKLFNEQSGERHPSDLAGALSKALCFINRTV
RGTSLQPQHTTASSSVTSRFIAGDKATPASSSSSSSSSAPKAAGRDRVSSGARVTPRIGV
VSVSPDSSVEYFAAMNCIFAAQKNDVPIDVCAMGEEAAILQQAAHLTNGTYVKVHHPSQL
LQSLMMGFVTSSDAHVLVRPVQRRINFDASCFCHGRTVDIGYVCTVCLSVYCERLASCRI
CGAEFSDKPGA
NT seq 936 nt   +upstreamnt  +downstreamnt
atgagttcgctgtttgtgttgatcgtggacctgcatccagcgcgatggaagcagttgagc
gaggacgcgtccctggatgaggccatgaaccagatttgtgtcttcttgaacgctcaactc
agtgtacacgtctcaaacacaatcgccgtcattggcgcagcaccaaagaagagtatgttc
ttgtatccatctgcggtgaagatgccttcaccggatgaccgccaagaactgttctcggag
atgaatgccacaatcttagccaacgcaacaaagcttttcaacgaacaatctggcgagcga
cacccctcagaccttgctggcgccctctccaaagcgctctgcttcatcaaccggacggtg
cgaggcacttccttgcagccgcaacacacgacggcaagcagctctgtcacatcccggttc
atcgccggagacaaggcgacaccagcatcctcatcctcatcgtcatcatcgtcagcaccg
aaagcagcagggcgcgaccgcgtatcatctggtgcgcgcgtcacaccgcgtattggcgtt
gtctccgtatccccagacagctctgttgaatactttgcggccatgaactgcatcttcgcc
gcacagaagaacgatgttccgattgacgtgtgtgcgatgggagaggaggcagccatcttg
cagcaggccgcgcatctcacgaatgggacatacgtcaaagtccaccacccgagccagctc
ctgcagtcactcatgatggggtttgtgacgtcctctgatgcgcatgtgctcgtgcgcccc
gtccagcgccgcatcaactttgacgcgtcatgcttctgccacggccgcaccgtcgacatc
ggatacgtctgtaccgtctgcctgtcagtctattgcgagcggctggcctcctgcagaata
tgcggggcagagttctcagacaagccgggcgcgtga

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