Salpingoeca rosetta: PTSG_03422
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Entry
PTSG_03422 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
sre
Salpingoeca rosetta
Pathway
sre03022
Basal transcription factors
sre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PTSG_03422
09124 Replication and repair
03420 Nucleotide excision repair
PTSG_03422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sre03021
]
PTSG_03422
03400 DNA repair and recombination proteins [BR:
sre03400
]
PTSG_03422
Transcription machinery [BR:
sre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PTSG_03422
DNA repair and recombination proteins [BR:
sre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PTSG_03422
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
16076595
NCBI-ProteinID:
XP_004996008
UniProt:
F2U556
LinkDB
All DBs
Position
Unknown
AA seq
311 aa
AA seq
DB search
MSSLFVLIVDLHPARWKQLSEDASLDEAMNQICVFLNAQLSVHVSNTIAVIGAAPKKSMF
LYPSAVKMPSPDDRQELFSEMNATILANATKLFNEQSGERHPSDLAGALSKALCFINRTV
RGTSLQPQHTTASSSVTSRFIAGDKATPASSSSSSSSSAPKAAGRDRVSSGARVTPRIGV
VSVSPDSSVEYFAAMNCIFAAQKNDVPIDVCAMGEEAAILQQAAHLTNGTYVKVHHPSQL
LQSLMMGFVTSSDAHVLVRPVQRRINFDASCFCHGRTVDIGYVCTVCLSVYCERLASCRI
CGAEFSDKPGA
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgctgtttgtgttgatcgtggacctgcatccagcgcgatggaagcagttgagc
gaggacgcgtccctggatgaggccatgaaccagatttgtgtcttcttgaacgctcaactc
agtgtacacgtctcaaacacaatcgccgtcattggcgcagcaccaaagaagagtatgttc
ttgtatccatctgcggtgaagatgccttcaccggatgaccgccaagaactgttctcggag
atgaatgccacaatcttagccaacgcaacaaagcttttcaacgaacaatctggcgagcga
cacccctcagaccttgctggcgccctctccaaagcgctctgcttcatcaaccggacggtg
cgaggcacttccttgcagccgcaacacacgacggcaagcagctctgtcacatcccggttc
atcgccggagacaaggcgacaccagcatcctcatcctcatcgtcatcatcgtcagcaccg
aaagcagcagggcgcgaccgcgtatcatctggtgcgcgcgtcacaccgcgtattggcgtt
gtctccgtatccccagacagctctgttgaatactttgcggccatgaactgcatcttcgcc
gcacagaagaacgatgttccgattgacgtgtgtgcgatgggagaggaggcagccatcttg
cagcaggccgcgcatctcacgaatgggacatacgtcaaagtccaccacccgagccagctc
ctgcagtcactcatgatggggtttgtgacgtcctctgatgcgcatgtgctcgtgcgcccc
gtccagcgccgcatcaactttgacgcgtcatgcttctgccacggccgcaccgtcgacatc
ggatacgtctgtaccgtctgcctgtcagtctattgcgagcggctggcctcctgcagaata
tgcggggcagagttctcagacaagccgggcgcgtga
DBGET
integrated database retrieval system