Salpingoeca rosetta: PTSG_03816
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Entry
PTSG_03816 CDS
T04136
Name
(RefSeq) single-subunit RNA polymerase
KO
K10908
DNA-directed RNA polymerase, mitochondrial [EC:
2.7.7.6
]
Organism
sre
Salpingoeca rosetta
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
sre03029
]
PTSG_03816
Enzymes [BR:
sre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PTSG_03816
Mitochondrial biogenesis [BR:
sre03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial RNA polymerase
PTSG_03816
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol
RPOL_N
PPR_2
SASP
Motif
Other DBs
NCBI-GeneID:
16076129
NCBI-ProteinID:
XP_004995549
UniProt:
F2U5G9
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MRGGGATGAAAAAAARWSLLRCGGTGSNSVRVSAVQRGGLVARSSQIRRGSARAQQQIFA
GCRRWSSNSTLSSSINTTANQSSSGSGGVRASCWCSLMPKGGSTMRHGRQQVTLPHTSLR
YLSHTQSSSAAAATAGAAPWLHWHRHAHASAPQPQQPQAQHQHRRRYSSNGETPSVADTL
PLSDTPMVADAHANTTAPSTVAGAADQAATRTASADDSCTAPSSTLPVYSKVTQQLLGML
RRVSEQEENAPQGKKATKPGLIEQLVEEKRCVSQVQEYLAMFEVHVQNGNINLAEEILYN
EDLRLPITTDKFNILLKHCAKHTYDLRCESIFNHMLHMNVPPDATTYALLILAIRRHDKP
DAIRHILQLAADMGFSHHDMLRAPLFATDINLLDLFKKQLQRVGLADASRPRPHVVDVEL
YEQQWNQEASLGVSLDAIPTRSTREAFDEFMAKPNVDSETNMSAYHIWIDDIAAAIDHQR
EIMVSSPKQVDAELAWKILYNSFVDSRAIATAALSVFEHQTAANPYGCKMNSMVMSIGRA
VYRTFAVALAREAGPSDLERTVYARYHQIMSDREQMKKHSPSKLWRQLMKEYSIESGVSV
PNEDSGLAFWTPRMLGAVGGEMIDLVLRKATLSAITGRAEDKELPAFYHTYEFEGTKRFG
FIRTHDTVQDYSYNFVATNAQLGKNVFRRSIDAVNLPMLVLPKPWTGVRTGASLVSPVTI
MRTFDSHFHHYALLAETTHLLDDMFDALTYLSSMAWRVNTKVFDVVRAAFEAEVGVEELA
IAPHIIQPPPVPARTADMSAEDKAKYQRQVMEHRKQSSEAYSQRTTLHLKLMVAQALRDQ
DFYLPHNLDFRGRAYTIAPYLTHIGDDLSRGLLVFAEKKPLGKNGLRWLKIHLANVYGND
KCSLDDREKFAEDNMHHVEETVRNPLRFLEDGEPMWWLQGDNPWQVLAVCNELHDAMCAP
NPEEFESGFPVHQDGTCNGLQHYAALGRDVEGARHVNLVRVPEDDRPQDVYSAVARTIDT
HLQRHAQGDFSSTSKLPVSHEVAQELASLLVAQGPMKRKIVKQTVMTNVYGVTFVGGREQ
IGRQLKAAKVVPPEKVYATASYLTALVFLSLGEIFEKAQLIQQWLSQQAKKIAASGEPVA
WVTPIGMPVVQPYHNAIKSTFSTNLQTIWLVETGNPSQLPAVGKQGSAFPPNFVHSLDST
HMMMTANACRKDGVAFASVHDSYWTHAATVDQMSRHTREQFVNIHSRPLLKDLHSFFRLQ
YEGRKYVRPRGNDETTVEIDPCPEQGEFDINEVLNSKYFFS
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggcggaggcgcaacaggcgcagccgctgcggctgcggcgagatggtcgttgttg
cggtgtggagggactggaagcaatagcgtcagggtcagtgctgtgcagaggggtgggttg
gttgcgagaagcagccaaataagaagaggtagtgcccgtgcacaacaacagatatttgct
ggatgcagacgctggagcagcaacagcaccttgagcagctccatcaacaccaccgccaac
cagagcagcagcggaagcggcggcgtaagggccagctgctggtgctcgttgatgcccaag
ggcgggagcaccatgcgccatggtcgccagcaggttactttgccacacaccagcttgcgt
tatctatcgcacacacaatcatcatcagcagcagcagcaacggctggcgccgcgccatgg
ctgcactggcatcgccatgcacacgcttcagcgcctcaaccacagcagccacaagcgcaa
caccagcaccgcaggcgatactcctccaacggagagacaccgtcggtagcagacacgctg
ccgttatcagacacgccgatggtggcagatgcgcatgcgaacacaacagcaccgagcaca
gtagctggcgccgcggaccaagcagccacgcggaccgcaagcgcggatgactcgtgcacg
gcaccttcatccacactgcccgtgtacagcaaagtcacgcagcagttgctgggcatgctg
aggcgagtgtccgagcaagaggagaacgcgccgcagggcaagaaggccaccaagcctggt
ctcattgagcagctggtggaagagaagcgctgtgtctctcaggtgcaggagtacttggcc
atgtttgaagtgcacgtgcagaacggcaacatcaacttggcagaggagatcctgtacaac
gaagacctgcggctgccaatcaccacggacaagttcaacatcctcctcaaacactgcgcc
aaacacacgtatgatcttcgttgcgagagcattttcaaccacatgctgcacatgaacgtc
ccgccagatgcaaccacatatgccctgctcatccttgccatcagacgccacgacaagcca
gatgccatccgccacatcctacagcttgcagctgacatggggttttctcatcacgatatg
ctgcgcgcaccgctcttcgccacagacatcaacttgctcgacctcttcaagaagcaactg
cagcgcgtcgggctggcggatgcgagccggccgcgaccgcacgtggtggacgtcgagttg
tacgagcagcagtggaaccaggaggcatcactcggtgtatccctggatgcgattcccacg
cgatcgacgcgcgaagcgtttgacgagttcatggcgaagccaaacgtagattcggagacg
aacatgtctgcgtatcacatctggatcgacgacattgcagccgccatcgaccaccagcgc
gagatcatggtctcgtcccctaaacaagtggatgctgagctggcgtggaagattctgtac
aacagcttcgtcgactcccgcgccatcgctactgccgccctctcagtctttgagcaccag
accgcggccaacccgtacggctgcaagatgaactcgatggtgatgagtattggccgcgct
gtgtaccgcacattcgccgtcgccctggcccgcgaagctggcccctccgacctggagcga
acggtgtacgcccgctatcaccagataatgtcggacagagagcagatgaagaaacacagc
ccgtcaaagctctggcgccagctcatgaaggaatactcgattgagtcgggtgtctctgtt
cccaacgaggactcgggtctcgccttctggacaccgcggatgctgggtgctgttggtggc
gaaatgatcgacctggtcctgcgaaaggcaacactgtctgccatcacagggagagccgaa
gacaaggaactgcccgcgttttatcacacgtatgaatttgagggaacaaaacgttttggt
ttcatccgcacccacgacaccgtccaagattactcgtacaactttgtcgccaccaacgcc
cagctcggaaagaatgtgtttcggcggtcgattgacgccgtgaacctgccgatgttggtc
ctgccaaagccctggacgggcgtgcgcacgggtgccagcctcgtctccccagtgacgatc
atgcgcacgtttgattcgcacttccaccactacgcgctgcttgcggagacgacccacctg
ctcgacgatatgtttgatgccctcacctacctctcctccatggcatggcgtgtcaacaca
aaggtgtttgatgtggtgcgcgccgcttttgaggcggaagttggcgttgaagagctcgcg
attgcaccgcacatcattcagccgccgccagtgccagcaaggacggcagacatgtctgcg
gaagacaaagccaagtaccagcgccaagtcatggagcatcgaaagcagagctcggaagcg
tattcccaacgcaccactctccacctcaagctcatggtcgcacaggcgctgcgggaccag
gacttttacctcccgcacaaccttgacttccgtgggcgcgcgtacaccatcgctccgtac
ctgacacacattggtgacgacctttcccgcggcctccttgtgtttgccgagaagaagccg
ctggggaagaacggcctgcgctggctgaagatccatcttgcaaacgtctacggcaatgac
aagtgctcattggacgaccgcgagaagtttgctgaagacaacatgcaccacgtcgaagag
actgttcgcaatcccctccgcttcctcgaggacggggagcccatgtggtggctccaaggc
gacaacccctggcaggttctggctgtgtgtaacgagctacatgacgcaatgtgtgcccca
aacccggaggaattcgagtccggttttcctgtccaccaggatggcacgtgcaacggcctg
cagcactacgcagcgcttggacgcgacgtggaaggtgcgcgacacgtgaatctcgtgcgc
gttccggaagacgaccgcccgcaggacgtgtacagcgccgttgctcgcacgatcgacacg
cacttgcagcgccacgcacagggcgacttctcatccacgtcgaagctgcccgtatcacac
gaggtggcgcaggagcttgcgtcgctgctggtggcacaaggccccatgaaacgcaagatt
gtcaagcagacggtgatgacgaacgtgtacggcgtgacgttcgtcggcgggcgggagcag
atagggcgccagctgaaggctgccaaggtggtgccgcctgagaaggtgtatgcgacggcg
tcatatctgacggcgctcgtgttcctgagtctgggcgagatctttgagaaggctcagctg
atccagcagtggctgtcccagcaggcgaagaagattgccgcgtcaggcgagccggtggcg
tgggttacccccattggcatgcccgtcgtgcagccgtaccacaacgccatcaagtccacg
ttttcaacaaacctgcagaccatctggcttgtggagactggcaatccgtcacagttgccg
gcggttggcaagcaggggtcagcgttcccaccaaactttgtccactcgctcgactcaacg
cacatgatgatgaccgccaacgcgtgtcgcaaggacggagttgcctttgccagcgtccac
gacagttactggacccatgccgcgacggtggatcaaatgagcagacacacgcgcgagcag
tttgtcaacattcactcgcgtccgctgttgaaggatttgcattcattcttcaggctgcag
tatgagggtcgcaagtacgtgcgcccgcgtgggaacgacgagacgacggttgaaatcgac
ccgtgcccggagcagggcgaattcgacatcaacgaggtactgaattccaagtatttcttc
agctga
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