KEGG   Salpingoeca rosetta: PTSG_03964
Entry
PTSG_03964        CDS       T04136                                 
Name
(RefSeq) ubiquitin
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
sre  Salpingoeca rosetta
Pathway
sre03010  Ribosome
sre04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    PTSG_03964
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    PTSG_03964
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:sre03011]
    PTSG_03964
   04121 Ubiquitin system [BR:sre04121]
    PTSG_03964
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sre04147]
    PTSG_03964
Ribosome [BR:sre03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    PTSG_03964
  Archaea
    PTSG_03964
Ubiquitin system [BR:sre04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   PTSG_03964
Exosome [BR:sre04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   PTSG_03964
  Exosomal proteins of colorectal cancer cells
   PTSG_03964
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 Ubiquitin_5 IBR Dsc3_N TBK1_ULD
Other DBs
NCBI-GeneID: 16075440
NCBI-ProteinID: XP_004994860
UniProt: F2U7D9
LinkDB
Position
Unknown
AA seq 156 aa
MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKHKTVKLAALKYYKVDGSGKVTRLLRE
CPSEECGAGVFMAAHFDRQTCGKCGLTYRFDEKQEA
NT seq 471 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaagaccctcacgggcaagaccatcaccctcgaggtcgagccctcc
gactcgatcgagaacgtcaaggccaagatccaggacaaggagggtatcccccctgatcag
cagcgccttatcttcgccggtaagcagctcgaggatggccgcaccctgagcgactacaac
atccagaaggagtccacactgcaccttgtgctccgcctgcgtggtggtggcaagaagcgc
aaaaagaagaactacaccacccccaagaagatcaagcacaagcacaagaccgtcaagctg
gctgccctcaagtactacaaggttgatggctctggcaaggttacccgtctgctccgcgag
tgcccctctgaggagtgcggtgctggtgtcttcatggctgcccactttgaccgccagacg
tgcggcaagtgcggtctgacctacaggttcgacgagaagcaggaggcataa

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