Salpingoeca rosetta: PTSG_03969
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Entry
PTSG_03969 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K10754
replication factor C subunit 1
Organism
sre
Salpingoeca rosetta
Pathway
sre03030
DNA replication
sre03410
Base excision repair
sre03420
Nucleotide excision repair
sre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PTSG_03969
03410 Base excision repair
PTSG_03969
03420 Nucleotide excision repair
PTSG_03969
03430 Mismatch repair
PTSG_03969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sre03032
]
PTSG_03969
03400 DNA repair and recombination proteins [BR:
sre03400
]
PTSG_03969
DNA replication proteins [BR:
sre03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
PTSG_03969
DNA repair and recombination proteins [BR:
sre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
PTSG_03969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_33
AAA_30
nSTAND3
AAA_16
AAA_5
AAA_22
RCF1-5-like_lid
PTCB-BRCT
Rad17
AAA_19
AAA_assoc_2
RuvB_N
BRCT_2
AAA_14
AAA_18
Motif
Other DBs
NCBI-GeneID:
16075444
NCBI-ProteinID:
XP_004994864
UniProt:
F2U7E3
LinkDB
All DBs
Position
Unknown
AA seq
1046 aa
AA seq
DB search
MADIRAFFSQKPKKKGGKKKQPEVIDVDSDDGDFVDSKTEISARDFFSQRPASKRAKKGK
DKPTAKAQRSMIIEDDDEDEVVAVPDDNDDDIDEAEALAVLMGDDDDNGGGDDDDDAIGN
GSGSGDEKGAKQTKKSKQDEKTVKKENKSATASPVKTRRSPRKKAAAAAAAKPKREVIED
DDSSGDGGHDSTNKAVQGGPSKTSPKKSKGSTREKGRASVDTKTKATPKTAPPRAVIEDD
DDDDDDDDGGFVPAALKKKKAKTTSPKKSATSTSKTAATSASSASSSASAASASAGGGST
ETTPKKGSNFWAYKQRMQNLAPPNLGQKPLPSGAQNCLGGLKFVLTGVLDSIERDTAERL
IKDHGGAVQKSVSGRVNYIVAGIEPGPSKMKKAEELKLNVIDEDGLFDLIRTLPEKPFDD
ITTGGKKGGKKATATKKSATTSAALKASSSSSSSAAGAKRATATASSPPPQSAVGDLWTV
KYAPKSMEKIVGQSGARSNAKKLKAWLESWHQHLPRKNNKPTKNDTGFDKRCALLVGPPG
IGKTTTAKLVCEACGYEPIELNASDARSKKLLEAQIGPLTRNCTMTQFYGTATKPRATKV
AVIFDEVDGMAGNEDRGGVGEIMKLIKTTKMPIICIANDVPQKLRRLRDVSFHLPFRKLQ
TKQIRSAMMSVAFKEGLSLNPIVLDRIIEGANGDIRQILNNMYMWSRDNANFVERQDIID
RDIKNATKYTKKTPWDCLPLFFRAAQRPRGYELQEAFFQDYSAMPLFMQENYLRCAPHGK
SGPVDVLSTIADAADAISEAELVGNFMMANSAFSALPVYGYMSCIRPGFIMRGSLHGRIE
FSSWFGNNSKRTKSRRQCSELQQHMRKDISADTTDMRLSYVPYLRAQIMQPLIEQGADGA
KDAVAVMNAYNLTRADWDSLHELSQLSGLPDPTKRLDTKTKTAFTRAYNSSAHMLPYAEE
AASKRKKKQKAPDTEEMFKMEEDEGGSNDGDEDDEDDEDVSGDAMIKQKKKRGGGGGKAA
AASKKRSGAKKKTASKGASKKKAKRG
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggcggacatccgggccttcttttcacaaaagccaaagaagaagggcggcaagaagaag
cagccagaggtcatcgatgtggactctgatgatggagactttgtcgactccaagacggaa
atcagtgctcgcgactttttcagccagcgcccagcatcgaagcgcgcaaagaaaggcaaa
gacaagcccacagccaaggctcagcgctccatgattatcgaggatgatgacgaggacgaa
gttgttgcggttcccgacgacaatgacgatgacattgatgaggctgaagcgctggcggtg
ctgatgggtgacgacgacgacaacggtggcggtgatgatgatgatgacgcgattgggaac
ggaagcgggagtggcgacgagaagggagcgaagcagacgaagaagagcaagcaggacgag
aagactgtcaagaaggagaacaagtctgcgacggcatcgccagtcaaaacacggcgttca
ccccgcaagaaggcagcggcagcggcagcggcgaaaccaaaacgagaggtgattgaggac
gacgacagcagcggtgatggtggccatgacagcaccaacaaggcggtgcagggtggcccg
agcaagaccagccccaagaagagcaaggggagcacgcgggagaaggggcgagcatcggtc
gacacgaagacaaaggcgacaccaaagacagcgccaccacgcgccgtcattgaagacgac
gacgacgacgacgatgatgatgatggcggattcgttccagcagcgctgaagaagaaaaag
gccaagacgacgtcgcccaagaaatcagcaacgagcacatccaagacagcagccacatca
gcatcatcagcatcatcatcagcatcagcagcatcagcatcggcgggtggtggcagcacg
gagacgacaccgaagaaagggtccaacttctgggcgtacaagcagcgcatgcagaatctc
gcgccgccaaacctcggccagaagccgctgccatctggggcgcagaactgccttggcggc
ctcaagtttgtcctcacgggcgttctcgactccatcgaacgcgatacggctgagcggctg
atcaaggaccacggcggcgctgtgcagaagagcgtgagcgggcgggtcaactacattgtt
gccggaattgaaccgggcccctccaagatgaagaaggccgaggagttgaagttgaacgtc
attgacgaggacggtctgtttgacctgattcgcacactgcccgagaagccatttgacgac
atcaccacaggtggcaagaagggcggcaagaaggcgacagcaaccaagaaatcagcaaca
acatcagcagcactcaaagcttcatcatcatcgtcatcgtcagcggcaggagcgaagcgt
gcaaccgctacagcgtcatcgccaccaccgcaatcggccgttggagacttgtggacggtc
aagtacgccccgaagagcatggagaagattgtgggtcagtcaggcgcgcgcagcaacgcc
aagaagctcaaggcctggctcgaatcctggcaccagcacctgccccgcaagaacaacaaa
ccaacaaagaacgacactgggtttgacaagcggtgtgcgctgctggttggtccgccgggc
attggcaagacgacgaccgcaaagctcgtctgtgaggcgtgcggttacgagccgattgag
ctgaatgcgagcgatgcgcggagtaagaagttgcttgaggcgcaaatcgggcccctcacc
cgcaactgcaccatgacgcaattctacggcaccgcaacgaagccccgtgcaaccaaagtg
gctgtgatcttcgatgaggttgacgggatggcgggcaacgaggaccggggcggcgttggc
gagattatgaagctcatcaagacaaccaagatgccgattatctgcattgcaaacgacgtg
ccgcagaagctgcgccgactgcgtgatgtctcgttccacctccccttccgcaaactgcag
acgaaacagattcgctcggccatgatgtccgtcgccttcaaagaagggctgtcgctcaat
ccgattgtgctggatcgcatcattgagggggcaaacggagacattcgccagattctcaac
aacatgtacatgtggagcagagacaacgcaaactttgttgagcgccaggacattatcgac
cgcgacatcaagaacgcgaccaagtacacgaagaagacgccctgggattgccttcctctc
ttcttccgcgccgcgcagcgaccgcgcgggtatgagctgcaggaggcgtttttccaggac
tactcggcaatgccgctcttcatgcaggagaactacctccgctgcgccccacacggcaaa
tccggacctgtggatgtcctttccaccatcgccgacgccgctgacgcaatctcggaagcc
gaactcgttggcaactttatgatggccaactctgcatttagcgccctccccgtctacgga
tacatgtcctgcatcaggcccgggttcatcatgcgtggaagccttcacgggcgcatcgaa
ttcagctcgtggttcggcaacaacagcaagcgcacaaaatcacgacgtcagtgcagtgag
ctccagcaacacatgcgcaaagacatttcggcagacaccacagacatgcgcctctcctac
gtgccgtaccttcgcgcgcagattatgcagcccctcatcgaacaaggcgctgacggagca
aaggatgccgtggcggtgatgaacgcgtacaacctgacgcgcgcggactgggactccttg
cacgagctgagccagctctcgggcctgcccgaccccacgaaacgccttgacacgaagacc
aagacggcgttcacgcgcgcgtacaacagcagcgcgcacatgctgccgtatgcagaggag
gccgcatcgaagcggaagaagaagcagaaggcacccgacacagaggagatgttcaagatg
gaggaggacgagggcggcagcaatgatggcgacgaggatgacgaggatgacgaggatgtg
tctggtgacgccatgatcaagcagaagaagaagcgcggtggcggtggcggaaaggctgct
gctgcatcaaagaaacgatcaggtgcaaagaagaagactgccagcaagggcgcgagcaag
aagaaagcaaagcgtggatga
DBGET
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