Salpingoeca rosetta: PTSG_04133
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Entry
PTSG_04133 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sre
Salpingoeca rosetta
Pathway
sre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PTSG_04133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_04133
Enzymes [BR:
sre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
PTSG_04133
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PTSG_04133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
Motif
Other DBs
NCBI-GeneID:
16075606
NCBI-ProteinID:
XP_004995028
UniProt:
F2U6P2
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MEEQTRTTETLSKGQELRVEAQPQQPVSVKVNFGKAELLGTELVAGKEYKLSSESQPIFT
WHGCSIAHTATTDAAYVAEETPMRQMLNLHAALENQRQKAHDSNGQGPRIMVVGPDFSGK
SSCCRILANYACRMYRTPILVDVDPNDNFFGMPCCVAAAPVTQPADAISGFVDATPVFFH
FGHTTVKGNSKFYAKAVERLGKTVQAKLSEDDKARASGVVVNCPTCPSDTLLQIQAAFNC
DVICVLDQERLVNELKRKLTASKVDGVKILKIPKSGGVIPLETEAKLRRTQERIRQYFYG
VPHHNPFMPHSVSIPFSRLRLFKVGAPEVPLDCLPIGAKRTEHELELEPILKFSVDLLRH
VVSVVGCEMTANSDQIKYSALCGFVVIESYNEERDSIKLLAPAPDRLPSTVFLLHETSFS
DTS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggaagaacaaacgcgaacgacagagacgctgagcaaagggcaggagctgcgagtggag
gctcagccacagcagccggtctccgtcaaggtcaactttggcaaagccgagctgctaggc
acagagcttgtcgcaggcaaggagtacaaattgagcagtgaaagtcagcccatcttcact
tggcacggctgctccatcgcacacaccgcaaccacggatgcagcttatgtcgcagaggaa
acgcccatgcggcagatgctgaacctgcacgcggctttggagaaccagagacaaaaagcg
catgattccaacggccagggcccaaggatcatggttgtgggtccagacttttccggcaag
tcgagctgctgtaggattcttgccaactacgcctgtcgcatgtaccgcacgcccatcctc
gtcgatgttgatccaaatgataatttctttggcatgccgtgctgtgttgccgctgcgcct
gtcacgcaaccagccgacgccatatcgggctttgttgatgcaacaccagtgtttttccac
tttggccacaccaccgtcaaggggaattcaaagttctatgcgaaagcggtggagcgcctt
ggcaagaccgtgcaggccaaactcagcgaggatgacaaggcgcgggcatctggggtcgtt
gtcaactgccccacgtgcccttccgatacgcttcttcagattcaggccgctttcaattgt
gatgtgatttgcgtcctggaccaagaacgcctcgtgaacgaactcaagcgcaagcttacc
gcttccaaggtggacggggtaaagattctcaaaattcccaagtctggtggtgtaatccca
ctggaaacagaggccaagctgcggcgaacacaggagcgcattcgccagtacttctatggc
gtcccccaccataacccgtttatgccccactcagtctccatccccttttcaagactgcgc
ctcttcaaagttggcgcaccggaggtgccactggattgtttgccgattggcgccaagcgc
accgaacacgaactcgagcttgagcccatcctcaagttctccgtcgacctgcttcggcac
gtggtttctgtggtgggatgcgagatgacggcaaactctgatcagatcaagtacagtgca
ttgtgtgggtttgtcgtcattgaaagctacaacgaggagcgcgattcgatcaagctgctg
gccccagcacccgaccgtcttccatccaccgtgtttctcttgcacgaaacatcattctct
gacacgtcctaa
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