Salpingoeca rosetta: PTSG_04166
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Entry
PTSG_04166 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sre
Salpingoeca rosetta
Pathway
sre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PTSG_04166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_04166
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PTSG_04166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
SOBP
Motif
Other DBs
NCBI-GeneID:
16075644
NCBI-ProteinID:
XP_004995065
UniProt:
F2U6S9
LinkDB
All DBs
Position
Unknown
AA seq
491 aa
AA seq
DB search
MSSSSDDDLYAVEDDATGTAPEAAATGAGATDTKQVEDDDTIDLTPAAIPGHEDDDEDSS
DEEVYEDTANVTIIKGGTEEPATTQAWGATKPDQPAQPQAQQQQQQQQQQQPAQPSTQAS
APQPIPTKPIGDGYTSQRPTKRFNLNPTAMYKGVNILDLQLESLPEKPWREPGADISDYF
NYGFDEETWKEYAKKQIEMRQAAEAIRNGSKDQQQQQRSQQQQQQQQQQRQQQQQNPVPP
QMSMQMPQGMFPPAPPPHMMPPHMMQGGMPFRPGMPPNMHPPPPMSMGYRMDRPPMPPPP
GMPPSAPGMRPPLIPGGAGGDMAPESSEYDRERSAGSRDTDRDRDRDGYGERDHDRERHG
RERDRERESSSRDRRDRDRDRDRDRDREGSERRHHRHRHEREHRGSSSSSVTAGGGGGGG
GDEGHPYEYQHAYPHPHHHHHPSHHRGERGRDRSSRDRDDRDDRRRPTRRHHDDNRKRVH
EYRQGAVWRRR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagcagcgacgatgacctctacgcagtggaggatgatgccactggcaccgcg
ccagaagccgcagccactggtgctggcgccacagacaccaaacaggtggaggacgatgac
accatcgaccttactcccgccgccattcccggtcacgaagacgacgatgaagacagcagt
gatgaggaggtgtacgaagacacggccaacgtgaccatcatcaagggcggcactgaggaa
ccagccacgactcaggcatggggtgccacaaaacccgaccaaccagcacagcctcaagca
cagcaacaacaacaacaacagcagcagcagcagccggcgcagccttcgacgcaagcatcc
gcgccacaacccatcccgacaaagcccattggtgacggctacacgtcccagcggcctacc
aagaggttcaacctcaaccccacagcaatgtacaaaggcgtgaacatcctcgatttgcag
ctggagagcttgcccgagaagccatggcgcgaaccaggcgctgacatttccgactacttc
aactacgggtttgatgaggagacgtggaaggagtacgcaaagaagcaaattgagatgcgc
caggcagcagaggccattcgcaacggcagcaaagaccagcagcaacagcaacgctcacaa
cagcaacagcagcagcagcagcagcagcggcagcagcagcaacaaaaccctgtgccgcca
caaatgagcatgcaaatgcctcaaggaatgtttccacctgctccaccgccacatatgatg
ccgccacacatgatgcaaggaggaatgcccttccggcccggaatgccgccaaacatgcat
ccgccgccacccatgtccatgggctaccggatggatcgcccgccaatgccgccgccgcca
ggaatgccgccatcggcaccagggatgcggccgcccctgatacctggcggcgccggcggg
gacatggcaccagagagcagcgaatacgaccgggagcgcagcgccggcagcagagacacc
gacagagacagagacagggacgggtatggggagcgagaccacgacagagagcggcatggc
agggagagggacagggagcgtgagtcaagtagcagagacagacgtgaccgcgaccgtgac
cgcgaccgtgatcgtgatcgtgaaggatctgagcgccggcaccaccgccaccgccacgag
cgggagcaccgcggcagcagcagcagcagcgtcactgctgggggcggcggcggtggtggt
ggggatgaagggcatccatatgagtaccagcacgcgtacccacacccgcaccatcaccac
cacccgtcgcaccatcgcggggagcgtgggcgagaccgctcctcgagagaccgcgacgac
cgcgacgaccgcaggcgcccgacgcggcgccaccacgatgacaacagaaaacgtgtgcat
gagtaccgccagggcgcagtgtggcggcgacggtga
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