KEGG   Salpingoeca rosetta: PTSG_05354
Entry
PTSG_05354        CDS       T04136                                 
Name
(RefSeq) LSM domain-containing protein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
sre  Salpingoeca rosetta
Pathway
sre03018  RNA degradation
sre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTSG_05354
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTSG_05354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_05354
   03041 Spliceosome [BR:sre03041]
    PTSG_05354
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PTSG_05354
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PTSG_05354
Spliceosome [BR:sre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PTSG_05354
 Complex C
  U2 snRNP components
    PTSG_05354
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 16074503
NCBI-ProteinID: XP_004993925
UniProt: F2UA69
LinkDB
Position
Unknown
AA seq 112 aa
MILLSILFHTNKSSTIKMLFTSFFKTLVGKTVVVELKNDLSIQGTLTSVDQFLNIKLDDI
TVGNVDKYAHMVSVKNCFIRGSVIRYIQLPPEHVDTQLLQDATRREAGEKSA
NT seq 339 nt   +upstreamnt  +downstreamnt
atgattttgctgagtattctcttccacaccaacaaatcctcaacaatcaagatgctgttc
acctccttcttcaagacgctcgtcgggaagacggtcgttgtggagctcaagaatgacctg
agcatacaaggaaccttgacatccgtcgatcagttcctcaacattaagctggatgacatc
accgtcggcaacgtggacaagtacgcacacatggtctctgtgaagaactgcttcatccgc
ggttctgtgatccgctacatccagctcccgccagaacacgtcgacacacagctgctgcag
gacgccacccggcgcgaggctggcgagaaaagcgcgtag

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