Salpingoeca rosetta: PTSG_05354
Help
Entry
PTSG_05354 CDS
T04136
Name
(RefSeq) LSM domain-containing protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
sre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTSG_05354
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_05354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_05354
03041 Spliceosome [BR:
sre03041
]
PTSG_05354
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PTSG_05354
mRNA degradation factors
5'-3' decay
Lsm complex
PTSG_05354
Spliceosome [BR:
sre03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PTSG_05354
Complex C
U2 snRNP components
PTSG_05354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
16074503
NCBI-ProteinID:
XP_004993925
UniProt:
F2UA69
LinkDB
All DBs
Position
Unknown
AA seq
112 aa
AA seq
DB search
MILLSILFHTNKSSTIKMLFTSFFKTLVGKTVVVELKNDLSIQGTLTSVDQFLNIKLDDI
TVGNVDKYAHMVSVKNCFIRGSVIRYIQLPPEHVDTQLLQDATRREAGEKSA
NT seq
339 nt
NT seq
+upstream
nt +downstream
nt
atgattttgctgagtattctcttccacaccaacaaatcctcaacaatcaagatgctgttc
acctccttcttcaagacgctcgtcgggaagacggtcgttgtggagctcaagaatgacctg
agcatacaaggaaccttgacatccgtcgatcagttcctcaacattaagctggatgacatc
accgtcggcaacgtggacaagtacgcacacatggtctctgtgaagaactgcttcatccgc
ggttctgtgatccgctacatccagctcccgccagaacacgtcgacacacagctgctgcag
gacgccacccggcgcgaggctggcgagaaaagcgcgtag
DBGET
integrated database retrieval system