Salpingoeca rosetta: PTSG_05966 Help Entry PTSG_05966        CDS       T04136                                  Name (RefSeq) DEAH box polypeptide 34   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism sre  Salpingoeca rosetta Pathway sre03018   RNA degradation Brite KEGG Orthology (KO) [BR:sre00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     PTSG_05966  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sre03019]     PTSG_05966    03012 Translation factors [BR:sre03012]     PTSG_05966 Enzymes [BR:sre01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      PTSG_05966 Messenger RNA biogenesis [BR:sre03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      PTSG_05966 Translation factors [BR:sre03012]  Eukaryotic type   Initiation factors    Initiation associated factors     PTSG_05966 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Helicase_C dsrm OB_NTP_bind DEAD HA2_C HA2_N AAA_19 AAA_22 Cas3-like_C_2 ATPase AAA_16 Motif Other DBs NCBI-GeneID:  16073432 NCBI-ProteinID:  XP_004992859 UniProt:  F2UDA7 LinkDB All DBs Position Unknown AA seq 1912 aa AA seqDB search MANARAILNVFSTKTRHTIDISYGDPVGPPHMPTFECTVSVGSLVSCSARGGGKKTAMQD ACKQAVEALKAQGYMRPDGEVGDVPPPGAPGMSRPPAQPPPASHQQPPPPHGQPPYPHHQ PPHQPPYDPHYQAYPQYPSSYPYPPPHYPGQPPPPPPPSSTYPDYYYQQQHYHHPPPPPP PTSERPARGPDAHTREQHDPHRRGRGRSSHADVPYHHQQQQQQQQQHEYPQREHPQQEEQ HHPRHQEPRTPMAGPASTPSSQHDPYFHEQQQQQPPAPRGRFAQQQQQQMQPVRGRGPRM PPPHVQQPPHLQQPPHLQQPPHLRHQQQHQQQQQRVPPPASSSTPHHAEYAAHRPPYGAA THDRSQRAKEEQEVRDAHAHAHARPQPTRGRGPQGRMHDYSPAVKQEQQLSPMHRDAGRG RGRGRAMQLGRDDYGDDDDDDGDGGAGDNDGDGRGAIRGDVDDRPPASKEPRGAASTRSG YSPYGYARGQAEPATAATTSSSSPPTASWTGGATTPRAPSRHSMDTGDSNAGSMPTTPHT APRARTTSPPPLPHDVYDIAQTKPMEPLSARTTATTATTPSTMTATGARGSPASIASGPH RGPATAAHHDGDGDGDGDGNGDGGRGRGRDAFQHDRHRVKHEPGAESEQPYQHEYQPYYP GYSHNPHQQQQHQPPPPPPHAQEQQQQQPYDPYYGYAQHHGDYSGPGGPPPPPPPHASAA SSSAYPYPQPPHYDPYYPYPPQHQQQQQQQQQQQPYQQPYTGYPGGPGSHQHPQQHMQPP PPPPPQHFHPPPPPDEFGPECRFELYRPPRMPRAEAGKTAKSVVMEYCQALKRTKPKVVV KQTGPQEASTFTAYCRVDWFDQPIVFQGTDKRKKDAEHRAMEQIVTYMLDTGIISAETGR APPRRPVDVAPHLQLDATTRHMLQGAVDRVEAALLAAAPLPPPAMPTEPSTTTAMEATGG AGTAAAGDRAALGGRGRGGRRSGGNGGNGDDDDEGLHLLGQEQVEAPAYLTRDLPAYNHR LEILGALAQANAVVVAGSTGTGKTTQIPQYLLEDFKRTHGEHRSCRIVVAQPRKISAISV AERIAQERGERLGESVGFQVRLQKMMPTAPQCIVLCTTAIALKYLDNPDMLEDMTHLVID EAHERSIESDLLLALARSKLGRLPHFKVVVMSATIQEHLFADYFDRCRIVEIESRMYPVR EVFLEDLRLIPRPERLEMSTSRPPTNFQTYPTTAGDVDAMEGHPDLWCAALSIALQDVRE GSVLMFFSGWKEMQRVRDEIMKRPNLHHCRVCCLHSSMTNQEQMLAFRPVPLPERKVVLA TNIAETSITIEDVTVVIDSGKEKTKRFDVMTKSFSLTPHWISKTSAVQRIGRAGRVREGL CYRMFTRTQFEQMEDHAKPEIRRLPLENLVLQVKVLVPHEHVQAFIGRLIEPPHPRKAHD AISNLVRMRAMEEDGETLTPLGQCMARLPLDAQFGKLLCLARVFGCQEPVLSIAAAMSVK DPFLKTDQTSAHHGPPRHGVGPGGPGGPGGPGGPGGAMLDEPPRRAFGRRFCSDSVALAE AFDQFLSARVPYEFCRAFNISYTGMRQIDSIRDQLRSYMASTTIEALLPPRPLSAGDNNG NSGGGSDGGGGGGQRAQLMAIVKACLCAALYPKVARIPRGPNGERIKTRKVLECSTGYPS TTLIHPSSTNNKMVLPTDFLVYLEQVETSAKFVRDTTCVSLLTMALFAGNHMHPVTVNSS AEDMPVFFNFDNNTAIMMSASAADFKLVHKARIIVDRLLMRMLSPDYECSQELRASFQEY LNVLANILDLPEPASPPKRQQPERAPQRHSQPPPPPHHHQQQQQHYQPPPPPQHLPLHAP APPPQYQQQQQQQQHQAYGAPYQAKHEPPPHGYHHIRRSPPYAPHPESPHQV NT seq 5739 nt NT seq  +upstreamnt  +downstreamnt atggcaaacgctcgcgccatcctcaacgtcttctccaccaagacgcgtcacaccattgac atctcgtatggtgaccccgtcggacccccacacatgcccactttcgagtgcacggtgagt gttgggtccttggtctcctgttcggcgcgtggcggtggcaagaagacagccatgcaggat gcatgcaagcaagccgtggaagcactcaaagcgcaaggctacatgcgtcctgatggagag gtcggggatgtgccaccccctggtgcacccggcatgtcgaggccacctgctcagccgcca ccagcatcacaccaacagccgccgccgccgcatggtcagcctccatacccgcaccaccag ccaccgcatcagcccccatacgacccgcactaccaagcctacccccagtatccgtcatcc tacccgtacccacccccgcactatcccgggcaaccgccaccaccaccgccaccatcctct acgtaccctgactactactaccaacagcaacactatcaccatccaccaccacccccgcca ccaacctcggagcggcctgcgcgcgggccggacgcccacacacgtgagcagcacgacccg cacaggcgtggccgtggccgcagctcccatgctgatgtcccataccaccaccagcagcag cagcagcagcagcagcagcacgagtacccgcaacgcgagcacccgcagcaggaggagcag caccacccgcgccatcaggaaccacggacaccaatggcaggtcccgcctccaccccatct tctcaacatgacccatatttccatgagcagcagcagcagcaaccaccagcgccccgcggg cgattcgcacagcagcaacaacagcagatgcagcctgtccgcggccgtggcccacgcatg ccgccaccccacgtccaacaaccaccccacctccaacaaccaccacaccttcaacaacca ccacatctccgccaccagcaacaacaccagcagcagcagcagcgcgtacctccaccagcc tcttcgtctactccgcaccacgccgagtatgcagcacaccgcccgccctatggtgcagcg acacacgaccgctcccagcgcgcgaaggaagagcaagaagtgagagacgctcacgctcac gctcacgctcgtccgcagcccacacgcggccgcgggccccaggggcgcatgcacgactac agcccagcagtgaagcaggagcagcagttgtcacccatgcacagagacgctggtcgtggt cgtggtcgtggtcgcgccatgcaacttggccgggacgactacggcgacgacgacgacgac gatggtgatggcggcgctggtgacaatgatggagacggacgtggtgctatacgtggcgat gttgacgaccgcccgccggccagcaaggagccgcgcggcgctgccagcacacgtagcgga tacagcccttacggctacgcacgtggccaggcagagccggcaacagcagcaacaacgtcg tcgtcgtcgccaccaacagcatcttggaccggcggagcgacaacgccgcgcgcgccttcc cgtcactcgatggatacgggcgactcaaacgctggcagcatgcccaccaccccgcacacg gcgccccgtgccaggacaacatcgccaccgccgctgccacacgacgtttacgacattgcg cagacgaagccgatggagccgctgtccgcacgaacgacagcaacgacagcgacgacgcct tccacaatgacggcgacgggcgcgaggggctcccccgcctccattgccagcggcccacac cgcggcccggcaacagctgctcatcatgacggggatggtgatggtgatggtgacggtaac ggtgacggtggacggggacgtggcagggatgcgttccagcacgaccgccaccgcgtcaaa cacgagccgggtgccgagagcgagcagccataccagcacgagtaccagccatactacccc gggtacagccacaatccacaccagcaacagcagcaccaacctccaccacctccgccacat gcgcaggagcagcagcagcagcagccatatgacccttactacgggtacgcacagcatcat ggagactatagtggccccggtggcccaccgccgccgccgccaccacatgcgtctgctgcc tcttcttcggcgtacccctacccgcaacctccccactacgacccctactacccatacccg cctcaacaccagcagcagcagcagcagcagcagcagcagcagccataccaacagccctac accgggtacccaggtgggccaggttcccaccaacatccacagcagcacatgcagccccca ccgccgccaccaccacagcacttccaccccccgccgccgcctgatgagtttgggccggag tgtcggtttgagctgtaccggccgccgcgcatgccgcgtgctgaggccggcaagacagcc aagtccgtggtgatggagtactgccaggccctgaagcgcaccaagcccaaggtggtggtg aagcagacgggcccacaggaggcgagcacgttcacggcctactgccgggtggactggttt gaccaacccattgtcttccagggcacagacaagcgcaagaaggacgcggagcaccgggcc atggagcagattgtcacgtacatgctggacacgggcatcatctcggcagagacgggccgg gcgccgccgcgcagaccagtcgacgtggctccgcacctgcagctggatgcaacaacacgc cacatgctgcagggtgccgtggacagggttgaggctgccctgcttgccgccgccccactg ccgccacccgcgatgcccacagagccgtcgacaacgaccgccatggaagcaacaggaggc gccggcacagcagctgctggcgacagggccgcactcggaggccgtggtcgtggtggccgc cgcagtggtggcaatggtggtaatggtgatgatgatgatgaagggttgcacttgcttgga caggagcaggtggaggcgccggcgtacctcacgcgcgacctgcctgcgtacaaccaccgc ctggagattcttggggccctcgcacaggccaacgccgtggtggtggccggcagcacgggc acgggcaagacgacgcagatcccgcagtacctgctggaggacttcaagcgcacgcacggc gagcaccgttcgtgccgcattgttgtggcgcagccgcgcaagatcagcgccatctccgtt gcggagcgcattgcacaggagcgcggggagcggctgggcgagagcgtgggcttccaagtc cgcctgcagaagatgatgccgactgcaccgcagtgcattgtgctgtgcacgacggcgatt gcgctcaagtacctggacaacccggacatgctcgaggacatgacgcacctggtgattgac gaggcgcacgagcggtcgattgagagcgacctgctgctggccctggcccgctccaagctg ggcaggctgccccacttcaaggtggtggtgatgagcgcaaccatccaggagcacctcttc gccgactactttgaccgctgccgcatcgttgagattgagtcccgcatgtaccccgtacgc gaggtgtttctggaggacctgcggctgataccacggccggagcggctggagatgagcacg agcaggccgcccaccaacttccagacgtacccgacgaccgcgggcgacgttgatgcgatg gaggggcacccggacctgtggtgcgccgcgctcagcattgccctgcaggacgtgcgcgag ggcagcgtgctcatgttcttctccggctggaaggagatgcagcgggtgcgcgatgagatt atgaagcgcccgaacctgcaccactgccgcgtgtgctgtctgcactcgtccatgaccaac caggagcagatgctggccttccggcccgtcccgctgccggagcgcaaggtggtgctggcg acgaacattgcggagacgtccatcaccattgaggacgtgacggtggtcattgacagcggc aaggagaagacgaagcgctttgacgtcatgaccaagtccttctcgctcaccccgcactgg atctccaagacgagcgcggtgcagcgcattggccgcgccggacgtgtgcgcgagggcctg tgttaccgcatgttcacgcgcacgcagtttgagcagatggaggaccacgccaagcccgag attcggcgcctgccgctggagaacttggtgctgcaggtgaaggtgctggtgccgcacgag cacgtgcaggcgtttattggccggctgattgagccgccgcacccgcgcaaggcgcatgac gcaatctccaacctggtgcgcatgcgagcgatggaggaggacggcgagacgctgacgccg ctcgggcagtgtatggcgcgcctgccgctggatgcgcagtttggaaagctgctgtgtctg gcgcgtgtgtttggctgccaggaacctgtgctgagcattgccgctgccatgagcgtcaag gacccctttctcaagacggaccagacctccgcccaccacggcccgcctcggcacggggtt gggcctggcggtcctggcggtcctggcggtcctggcggtcctggcggtgcgatgcttgac gagccaccgcgtcgtgcgtttggccggcggttctgcagcgacagcgttgcgctggcggag gcgtttgaccagtttctctctgcgcgcgtgccgtatgaattttgcagggcgttcaacatc tcgtacacggggatgcgccagattgacagcatccgggaccagctgcgttcgtacatggcc agcaccaccatcgaggccctgcttccgccccgtccactcagcgcaggcgacaacaacggc aacagcggcggcggcagtgatggtggtggtggtggcggtcagcgagcacagctgatggcg attgtcaaggcgtgtctctgcgcagccctctacccaaaggtggccaggattccacgcggc ccaaacggcgagcgcatcaagacgcgcaaagtgcttgagtgcagcacgggctacccgagc acgacgctcatccacccgtcctccaccaacaacaagatggtcctgccaacagactttctc gtctacctcgagcaggttgagacgtcggccaagtttgttcgcgacacaacatgcgtctcg ttgctgacaatggcgctgtttgcgggcaaccacatgcaccccgtgacggtcaactcgagc gcggaggacatgccggtcttcttcaactttgacaacaacacggccatcatgatgtcggcg agtgccgcggatttcaaactggtgcacaaggcgcgcatcattgtggaccggctgcttatg cgcatgctgtcgccggactacgagtgctcgcaggagctgcgcgcttcgttccaggagtac ctcaacgtcctcgccaacatcctcgacctgccagagccggccagtcctcccaagcgccaa cagccggagagggcaccacagcgccactctcagccaccgccgccgccccaccaccatcag cagcagcagcagcactaccagccgcctccgcccccgcaacacctgcccctgcacgcccct gccccaccaccgcaataccagcagcagcagcagcagcagcagcatcaggcgtatggtgcg ccgtatcaggcgaaacacgagccgcccccgcacgggtaccaccacatcaggcgctcaccg ccgtacgccccgcaccccgagtcacctcaccaggtgtag

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