Salpingoeca rosetta: PTSG_06273
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Entry
PTSG_06273 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K17890
autophagy-related protein 16-1
Organism
sre
Salpingoeca rosetta
Pathway
sre04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
PTSG_06273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sre04131
]
PTSG_06273
03029 Mitochondrial biogenesis [BR:
sre03029
]
PTSG_06273
Membrane trafficking [BR:
sre04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
PTSG_06273
Others
Specific organelles associated proteins
Auto phagosome
PTSG_06273
Mitochondrial biogenesis [BR:
sre03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
PTSG_06273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ATG16
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_HPS5
RMC1_N
Beta-prop_NUP159_NUP214
Beta-prop_DCAF12
Beta-prop_Vps41
Cytochrom_D1
Phage_pRha
Phage_CP76
Motif
Other DBs
NCBI-GeneID:
16073739
NCBI-ProteinID:
XP_004993164
UniProt:
F2UCF7
LinkDB
All DBs
Position
Unknown
AA seq
560 aa
AA seq
DB search
MSLMGSLATAATAMSQSGPWKAAIAQQLDRLSHRYDGIAPLFDAYTRLLKQNKQLKDENR
VIKDELDEAKEEMIARRRSNTRSGRKAKDNVVDAVEFEKLHTRYSEQCEELLRVYKERAQ
VNHSELLARQRAQDLEAEMTELKQRLERAEEAKGSHLELIETLNSMIDQRDMSISSLKDE
LSALSLQYTLVEEKRQEVEQERNELLSRMLEMKQQQADMQNDLLAEVTRKRHEKIAKDIE
DAQKELPDADEMPSILRLGLPTKATHNLDAHPGGAFSVAHSCSGSLFASGGADATVKVWN
SSGHNTQSLREHTGTVTCIDFAPAGDTMVSASNDKSVLIWSLRTSRSTFRCTGHTDKVYT
ARFLGHTKVVSASQDRTMKLWNAARGISERTYLLHSTCYDIASVDGPRFLSGHFDKYVRE
WDTRQSGTKPVRELNTEHREAIVAVALSPTRDYLLTSCRDGQLKLVDLLQMRVVKSFTSD
DATGQSACHPSFSPDGAHFAVGRQSGVIEIWNIHKTEIVQTLSSACHAGPVNCVSWGSSE
LVSAGKDGRLIVWEDDSLST
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgatgggttctttggcgacagcggcgacagcgatgagtcagagtgggccatgg
aaagcggctattgcgcagcaattggatcggctctcccaccgatatgacgggattgcgccg
ctttttgacgcctatacacgcttactcaaacaaaacaagcaactgaaggacgagaacagg
gtcatcaaggatgagttggatgaagcaaaggaggagatgattgcgcgacgacgctcaaac
acacggtccgggcgaaaagcaaaggacaacgtcgtggatgcagtggagttcgagaaacta
cacacgcgatacagcgagcagtgtgaggagctcctgcgcgtgtacaaggagcgcgcacag
gtgaatcacagcgaattgttggcgcggcagcgggcgcaagaccttgaggcggaaatgacc
gagctcaaacaacgactggagagggcggaagaggcgaaaggatcgcacctggagctcatc
gagaccctcaactcaatgatcgatcagagagacatgtcaatatcgtcgctcaaggacgag
ctgagcgcgctgtcgctgcagtacacactcgtggaggagaagcggcaggaggtggagcag
gagcgaaacgaactcctatcgcgcatgcttgagatgaagcagcagcaagcagacatgcag
aacgacctgctggcggaggttacgcggaaacgccacgagaagattgcaaaggacattgag
gatgcgcagaaggagctgccggatgccgacgaaatgccatccatcctgcgcctcggactg
ccaacaaaagcaacacacaacctggatgcccatcctggcggtgcgtttagcgtcgcccat
tcgtgcagcggctccctctttgccagcggcggtgcagacgccaccgtcaaagtctggaac
tcttctgggcacaatacccagtcactgcgtgagcacacgggcactgtgacgtgcatcgac
tttgcgcccgccggagacaccatggtctccgcctccaacgacaagagcgtcctcatctgg
tcccttcgaacaagccggtcaacgtttcgctgcaccggacacactgacaaagtgtacacg
gcacggttccttgggcacacgaaagtggtgtctgcgagtcaagaccgcacgatgaagctc
tggaacgccgcccgtggtatttcggaacgcacatacctcctgcactccacatgctacgac
atcgcctcagtggatggcccgcgattcttgagcggccactttgacaagtacgttcgagaa
tgggacactaggcagagcgggacaaagcctgttcgggagctcaacaccgagcaccgcgag
gccattgttgccgtggcattgtctccaaccagagactatctcttgacgagctgtcgagac
gggcagctgaaactcgtggacttgctccaaatgcgtgttgtcaagtcattcacctccgat
gacgcgacgggtcaatcggcgtgccacccaagcttcagccccgacggtgcacactttgcg
gtcggtcgccagtcaggcgtcattgagatctggaacattcacaagacggagattgtgcag
acactttccagcgcctgtcacgcgggccccgtaaactgcgtgtcatggggatcatctgag
cttgtgtccgctggaaaggacggcagattaatcgtgtgggaggacgactccctgtcaaca
tga
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integrated database retrieval system
