Salpingoeca rosetta: PTSG_06304
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Entry
PTSG_06304 CDS
T04136
Name
(RefSeq) ATP-dependent DEAD/H RNA helicase
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_06304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_06304
Enzymes [BR:
sre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PTSG_06304
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PTSG_06304
mRNA degradation factors
3'-5' decay
Ski complex
PTSG_06304
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
Ski2_N
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
ResIII
ALG11_N
ATPase_2
Motif
Other DBs
NCBI-GeneID:
16073770
NCBI-ProteinID:
XP_004993195
UniProt:
F2UCI8
LinkDB
All DBs
Position
Unknown
AA seq
1363 aa
AA seq
DB search
MATVDAADELAARVAAVALEERDAGDDGADDSGKDSAGPTMQLVADGAHGRLAAVVEKKQ
KEEAKEGEHDHEQGKSRASGPLLPVPLPPSAALSPEYIRARITDEYLLNLDALSVHDPAL
SQRFWQPSVQPEDLFLPMTSESPYMLQVERDPITFEAKAFRESHVSSSETAVSSMSMTRT
VAANADKTYGSTLQYPFMPGGMGVEVAQQMRLLASKKDTHQQESHSADADSKLTQPDLSL
FDFPENKVLPDLGDVSAHLPPPPSSSSSLAQQLALAGLLDDLALPLTREGEKDTSSTSTS
TTTTAAATATTTERQEGQQAEESSAVTSSAAVPALSELTAAAASGTGEESMGSGGGGGEE
EEEEEGNGEDGAGAKEEVEEDLEAALTKTYAQANAQSTGQEQTKNWAITIPVKAKVEDFE
FQVPNPAITYPFELDDFQKQAIICMERHESVFVAAHTSAGKTVVAEYAIAMSQKHMTRVI
YTSPIKALSNQKFRDFATRFDDVGLLTGDVQIRPDASCLIMTTEILRSMLYRGADMIRDV
EWVIFDEVHYINNAERGVVWEETIIMLPKHVNVVMLSATVPNTFEFADWVGRTRKQRVYV
IHTPKRPVPLEHFLYVGKVGKADPLFKIVDAHGKFHMKNHSAAVAGKKEGEGKKAAKTGS
YGPKKRGNASWGGDRVLYRSLVQMLKKENLNPCVVFTFSKKRCDQNAYNLRGTSFNTAEE
EGRVNAIFHRSISILKGSDAHLPQVERIKAMVRHGVGVHHSGLLPIMKELVEILFSQGLI
KVLFATETFAMGVNMPAKCVVFDSIRKHDGIQLRDLLPGEYVQMAGRAGRRGLDTTGTVI
VLCKGDVPDVNSLHTVMLGKPTVLASRFRLTYNMILNLLRVEDLRVEDMMRQSFSEADLQ
RETSSQRQALVEGQAQLAVLGSEEFPSDLEEYYTLAVEYLDASHRMMAAILASNNAMRIV
GAEGRVVVVNSQMYRNTLAVVLRTMKSSNGPAAPKDFEVLIMVDETSKQKPGQRKEKTNK
EESLLPLPVTHLDVPQGAVSHAIVRIAGTDIVAITGEKIPVDKKKVVQQRNATECTMVAQ
QLQQLAAKGLESLSQLHPIKDLGVKQLEAADAHTRMKALYKQLSGFECTSHPDFTSMYGR
LHERRVLMNQIDSLQHQLSDRNLTLLPEYEQRIEVMQRLQFINSERIVQLKGRVACEITT
CNELLVTQLIFHDILTPLDPEEVVALLSCMVFQNRRASEPRLTPRLEEGVSTITRMAIEI
AETQLACGMQVSVEEYLEEFKFGLVEVVYEWARGMAFKQITELTDEPEGSIVRCIIRLEQ
ACREVRNAARVIGDPVLSQKMEQAANMIKRDIVFAASLYTVDQ
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggccacagtggatgctgctgatgaactggcagcacgggtggcagcagtggcgctggag
gaacgagatgcaggtgatgatggtgctgacgatagtgggaaggacagcgctggtcctacg
atgcagctggttgccgatggcgcgcatggacgcctagcagctgtggttgagaagaagcag
aaagaagaagcaaaggagggcgagcatgatcatgagcaaggcaagtcgcgtgcaagcggg
ccactgctgccagtgccactgccgccttccgcagcgctgagcccagaatacatccgagct
cgcatcaccgacgagtacctcctgaaccttgatgccctcagtgtgcacgatccagcactg
agccagcggttctggcagccaagcgtacagcccgaggacctgttccttcccatgacatcc
gaatcgccgtacatgctgcaggttgagcgtgaccccatcacctttgaagccaaggcgttc
cgcgagtcgcacgtgtcaagcagcgagacagccgtctcctccatgtcaatgacgcgaaca
gtggctgcgaatgcggacaagacgtacgggtcaaccctgcagtacccgtttatgcctggc
ggcatgggcgtggaggtggcgcagcaaatgcgactgcttgcaagcaagaaagacacacac
cagcaagaaagtcacagcgcagatgcagacagcaaactgacacaacccgacctctccctc
tttgactttcccgagaacaaggtgttaccggacctgggcgacgtgtctgcacacctccca
ccaccaccatcatcgtcgtcgtcgcttgcgcagcagcttgctctggctggtctgctggac
gatcttgcactgcctttgacgcgcgaaggcgagaaggacacctcctccacgtccacttcc
acaacaacaacagcagcagcaacagcaacaacaacagagcgacaagagggccaacaagcg
gaagaatcgtccgctgtgacgtcatcagctgctgtacctgcgctgtcagagttgacagca
gccgctgccagcggtaccggcgaggagagcatgggcagtggtggcggtggaggggaagag
gaggaggaggaggagggtaacggagaggatggtgctggtgcgaaggaggaggtggaggag
gacttggaagcggcgctgacgaagacatacgcacaagccaacgcgcagtccacagggcag
gagcagacgaagaactgggccatcaccatccccgtcaaggcaaaggtggaggactttgag
tttcaggtgccgaatccggccatcacatatccgtttgaactcgacgactttcagaagcag
gcaatcatctgcatggagcggcacgagtctgtgtttgtggctgcgcacacatctgctggc
aagacagtggtggccgaatacgccattgccatgtcgcagaagcacatgacacgcgtcatc
tacacctcccccatcaaggccctctccaaccaaaagttccgggactttgcgacgcggttt
gatgatgttgggctgctgacgggcgatgtgcagatacggccggacgcctcgtgtctcatc
atgaccaccgagatcctcagatcaatgctctaccgcggtgcggacatgatccgagatgtg
gagtgggtgatcttcgacgaggtgcactacatcaacaacgccgagcgcggtgttgtgtgg
gaggagacaatcatcatgctacccaagcacgtcaacgttgtcatgctgtctgccaccgtc
ccaaacacgtttgagtttgcagactgggttggccgcacacgcaagcagcgcgtgtacgtg
atccacacgccgaagcgaccggtgccgttggagcatttcctgtacgtgggcaaggttggc
aaagcagaccccctcttcaagattgtcgacgcacacgggaaattccacatgaagaaccat
tctgccgcggttgccggtaagaaggagggcgaaggaaagaaagccgccaagacaggcagt
tacgggccaaagaagcgcgggaacgccagctggggcggtgaccgcgtgctgtaccgctcg
ctggtgcaaatgctcaagaaggaaaacctcaacccgtgcgtcgtcttcacgttctcaaag
aagagatgcgaccagaatgcgtacaatctgcgggggacgtccttcaacacggcggaggaa
gagggccgtgtcaatgcaatcttccaccgctccatatccattctcaagggttcagacgcc
cacctcccacaggttgagcggatcaaggcgatggtgcggcacggtgtcggcgtgcaccac
agcggtctcctccccatcatgaaggagcttgtcgaaatcctcttctcgcaggggctcatt
aaggtgctgtttgcgacggagacgtttgcgatgggcgtcaacatgccggcgaaatgcgtc
gtcttcgactccatccgcaaacacgacggcatccagctccgcgacctcctcccaggcgag
tatgtgcagatggctggccgcgctgggcgccgtggactcgacacaactggcaccgtgatt
gtgctgtgcaaaggggacgtgcctgatgtcaactcactgcacaccgtcatgctcgggaaa
ccaaccgttctcgcctccagattcaggctgacctacaacatgatcctgaacctgctgcgc
gtggaggatttgcgtgttgaagacatgatgcgccagagtttctcggaagcggacctgcag
cgcgaaacgagcagtcagcgccaggccctcgtggaaggacaggcccagctggctgtcctt
ggatcagaggagtttccatccgatttggaggagtattacacgctggctgttgaatacctg
gacgcgtctcaccgcatgatggcggccatcctcgcctccaataacgccatgcgcatcgtc
ggagcggaggggcgagttgtcgttgtgaacagccagatgtaccggaacacgcttgccgtt
gttctgcgcacaatgaagagcagcaatggaccagcggcgccaaaggactttgaagtgctc
atcatggtggatgaaacgtccaaacagaaacccggacagcgcaaggagaagacaaacaag
gaggagagcctgcttccactgcccgtgacacacctcgacgtgcctcaaggagcggtatca
catgcgattgttcgcattgcgggaacagacattgtcgccatcacaggagagaaaattccg
gttgacaagaagaaggtcgttcaacagcgcaatgcaacggagtgcacgatggtggcgcag
cagctgcagcagctcgcagcaaaggggctcgagtcgctgtcgcagctgcacccgatcaaa
gatctcggcgtgaagcagctggaggccgcagacgcgcacacgcgcatgaaggccctctac
aagcagctcagcggctttgagtgcacgtcccatccggatttcacgtccatgtacgggcga
ctgcacgagcggcgcgtactcatgaaccagattgactctcttcagcaccagctgagcgat
cgaaacctgacgcttctgcccgaatacgagcagcgcattgaggtgatgcagcggctgcaa
ttcatcaacagcgaacgcatcgtccaactcaaggggcgtgttgcgtgcgagataacgacg
tgcaatgagctgctagtgacgcaactcatcttccacgacatcctgacaccgctggacccg
gaggaggtggtcgcgctcctcagctgtatggtcttccagaacaggcgggcaagcgagcca
cggctgacaccgcggttggaggaaggcgttagcaccatcactcgcatggccattgagatt
gcagagacgcagctcgcgtgcgggatgcaggtctctgttgaggagtacttggaggagttt
aagtttggactggtggaggtcgtctacgaatgggcgcgaggcatggccttcaagcagatc
acagagctgacggacgagcccgaaggatcaattgtccggtgcatcattcgtttggaacag
gcgtgccgggaggttcgcaacgcggcacgcgtcattggcgaccccgttctgtcgcagaag
atggagcaggctgccaacatgatcaagcgcgacattgtgtttgctgcatctctctacact
gtcgaccagtag
DBGET
integrated database retrieval system
