Salpingoeca rosetta: PTSG_06376
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Entry
PTSG_06376 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_06376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_06376
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
PTSG_06376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
CSD2
DUF4862
Motif
Other DBs
NCBI-GeneID:
16073840
NCBI-ProteinID:
XP_004993265
UniProt:
F2UCQ8
LinkDB
All DBs
Position
Unknown
AA seq
925 aa
AA seq
DB search
MSAIQPQTTAQSVAPSLGSGASDFWPVWLQTAQDSPCSIFDLASEHQKPWRSINAVTAVT
GAAARTARRARRNSLNNASNSVADNTCSWPGHPAATRADDTKSAEAEQDDLCDEDIFRAV
YGHVFQLQFANRTRSVPDLFLASQAASEEHTTETGRASNVQHQMDLHADTAWTSTMTMRG
ARRQRPTAAVPPPPSSPMRSGKWRQRASFVWQMLCRPVQLLRLQPRNRATQGSVPRRKSA
PCLSHALAAPSLLSPAAPTTAVTAQMSAPGYYSQAEMDLAQRRRGQHSWGTDVQYACVQD
DEDEDGNSVSDFGYGATAEYTEVDATFSVALSPSSPSPPVIWQGGRGGLVSMEQYLRDDI
PCCSPACSSDTCAEALALAPNAVLLPENATHYMVPDDEVARRFPALLQHPDLTGVILMQT
CLRMVKSACSRRQHTQLAKHFRDKRSQSIIFRNENHAATWRERHANESAHAHALRLARAT
ASWYTTHLNNKVRVVIVTYTHGTAAQGQEDVRVGGTSDDHDGRVHVLDLRAYIEQFHSNS
PTLLDDFAAMEAELSVDDDSCDGQRTPQIGAGVGGGARANELGFTEYLSTSAIIAGINTG
EFVRGRIHVFKCVLVVPFDSRLPFIRVATTSPAALENKRLVVRIDSWPVASRFPNGHITE
ILGNAGDVATETKCLLIENTISVPPFSTAQLREMPVNTRERPWRMADDEIRRRRDIRHSH
LVFSIDPLGCEDVDDALGVRRLDNGNIELSVHIADVSYFVTPNTFTDAEARARGTTVYLV
NGRHDMLPVVLSADLCSLLADQDRYAMSVFWELDSERNVVSTWFGRTVIRSSYQLHYELA
QAIFDGLPDQNAIEQLPKLAKMSSHDATKRLARLRDAISLLITTARALKAKRADAGGLEL
ESDEVRFKVSTSDPAAIVEVARVRH
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaatccagccacagacaacagcccaaagcgtcgctccgagtttggggagcgga
gcaagcgacttctggccagtatggctgcagacagcccaagactcgccctgcagcatcttc
gatctcgccagcgagcaccagaagccttggcgatccatcaacgcagtcaccgcagtgaca
ggggctgccgcaagaacagcccgtcgggctcgccgcaactcgctcaacaacgcgagcaac
agcgttgccgacaacacctgctcatggcccgggcaccccgccgcgacacgcgctgacgac
acaaagagcgccgaggccgagcaggacgatctgtgcgacgaagacatctttcgcgccgtg
tacgggcatgtgtttcagctgcaattcgccaaccgcacacgcagcgtgccggacctcttc
ctcgcttcccaggcagcaagcgaggagcacacaacggagacaggccgcgccagcaacgtc
cagcatcagatggatcttcatgcggacacagcgtggacatcaacaatgacgatgagaggc
gctcggcgccagcgtcccacagcagcagtaccaccaccgccatcatcgccgatgcgctct
ggcaagtggaggcaacgcgcatcattcgtgtggcagatgctgtgcaggccggtacagttg
ttgcggctgcagccgcgcaaccgcgccacgcaggggagcgtgccacgtcgcaagagcgcc
ccgtgcctgagccatgctctggcggcaccgtcgcttctgtcaccagcagcaccaacgaca
gccgtgacagcacagatgtccgcgccagggtactactcgcaggcggagatggacttggcg
cagcgccgccgtggccagcattcctggggcacagacgtgcagtacgcgtgtgtccaggat
gacgaagacgaggatgggaacagcgtgtcggactttgggtacggcgctactgccgagtac
acggaggtggacgccaccttctccgtcgcactctcaccctcgtccccatcaccaccggtc
atctggcagggtgggcgcggtgggctggtgagcatggagcagtacctgcgcgatgacatc
ccatgctgcagcccagcttgcagcagtgacacgtgtgcagaggctctggccctcgcacca
aacgctgtgctgctccctgagaacgccacgcactacatggtccccgacgacgaggtggcg
cggaggtttcctgcactgctgcaacatccggatcttacgggcgtcatcttgatgcagaca
tgcctgaggatggtgaaatcggcgtgctctcgcagacagcacacacagctcgccaagcac
ttccgagacaaacgcagtcaatccatcatctttcgcaacgagaaccacgcagcaacgtgg
cgggagagacacgcaaacgaatcagcacacgcgcacgccttgcggctggcaagggcgaca
gcatcgtggtacaccacccacctcaacaataaggtgcgtgtggtcatcgtgacgtacaca
cacggcacagcagcacaaggacaagaagatgtgcgtgttggtggcactagcgacgaccat
gatggccgtgtgcatgtgcttgatcttcgtgcatacatcgagcaattccacagcaacagc
ccaacgctacttgacgactttgcagcaatggaggctgagttgtctgtcgacgatgacagt
tgtgacggccaacgcacaccgcagattggtgctggtgtcggtggtggcgcacgtgcgaat
gagctggggttcacagagtatctcagcaccagcgccattattgccggcattaacactggc
gagtttgtccgcggccgcatccacgtcttcaagtgcgtcctcgttgttccgtttgactcg
cgtcttccgtttattcgcgtggcgacaacatccccggcggcacttgagaacaagcgtctt
gtcgtgcgcattgactcgtggccggttgcgtctcgcttcccaaatggacacatcacggag
attttgggaaacgcaggcgacgtcgctacagagacgaagtgtctgctgattgagaacaca
atttccgtcccgcccttctccacggcacagctgcgtgagatgcctgtgaacacgcgtgaa
cgtccgtggaggatggccgatgacgaaatcaggcgccgtcgtgacattcgccactcccat
ctcgtgttcagcatcgatcccctcggatgcgaggatgtggacgatgcacttggcgtgcgt
cgtctcgacaacggaaacattgagctctccgtccacattgcagacgtgtcgtactttgtg
accccaaacacattcacagatgcagaggctcgtgcacgtggcaccacagtttatcttgtg
aatggtcgccacgacatgttgccggtcgtcctcagcgctgacctctgctcgctcctcgcc
gaccaggacaggtatgccatgtctgtgttctgggagctcgacagcgagcgcaacgtcgtg
tcgacgtggtttggccgcaccgtcatccgctcctcgtatcagctgcattatgaactggca
caggcgatctttgatggacttccggaccaaaacgccattgagcagttgccaaagctggca
aaaatgtcgtcacatgacgccacaaagcggcttgcgcggcttcgcgacgccatctcgctg
ctgatcacgactgcgcgggcgttgaaggcgaagagagctgacgcgggcggacttgagctg
gagagcgatgaggtgcgattcaaggtgtccacatcggacccggccgccattgttgaagtt
gcacgcgttcgccactga
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