Salpingoeca rosetta: PTSG_06661 Help Entry PTSG_06661        CDS       T04136                                  Name (RefSeq) snf family helicase Organism sre  Salpingoeca rosetta Pathway sre03082   ATP-dependent chromatin remodeling Brite KEGG Orthology (KO) [BR:sre00001]  09120 Genetic Information Processing   09126 Chromosome    03082 ATP-dependent chromatin remodeling     PTSG_06661 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  SNF2-rel_dom Helicase_C HSA ResIII DEAD Myb_DNA-bind_6 Myb_DNA-binding HDA2-3 Motif Other DBs NCBI-GeneID:  16072609 NCBI-ProteinID:  XP_004992050 UniProt:  F2UFM5 LinkDB All DBs Position Unknown AA seq 3098 aa AA seqDB search MADDTSKPASAPSTAATTTPAVAQQTGAQAATTVPVDQPTTATGPTTTAASTTAAPTPPS SATTPSITTTTPPAATAAPAATAAPAATAMTTTLPQHTAQANTTAVAQPSTSTPAPPASA PADNQQHTSAPVHPVQAGNAPATSNTPTPTATTATAATASETTATATPTVPATPTAATQP GDDAESARQGNASQAPKQEGGEGEAGPVSVRARVKELLNLKLKVFLEAHELRLRELFLVS TNNSLADLLHARTSGSPAMEEFVARNRVDGVTTARTTAGKRKSSADSGQPTPKRATVGSR SASPGGGASPRPGSPVTGGGGRGKGRGKGKSRARGKTPRSAGKAGKSSRAGSALAEEDAL PEATPTAAVPATGVATPKARRAKAAAATAAATTTTPTPGTSLAAQRTPRTRSKAASVAVD AEKQPEQETAAVAAGKAGTQAITTTGGAAPTATSAAPKKMKLKVSLDEAARLLHAEKELQ QRISEKRQQGVWVDKRLPKVAEPARPKVHQDYLLEEMAWLSDDFRMERKWKIAVARKLAR AVVRWHEARAQEGRRRMRQELNRKRKVAANVARDVQVFWKQMLKVVDYKHKLELDAVKTD AMNKHLDYLVGQTQSFTEDLTRGLQGKYAEYGKTAMAAHARRAAAKHAAALQQATGQQIT LPPAPSQQQQQQQQQGAPTQVADSTTAAAGASGDDGANKAKGKAAKKQRSKRDAVKKEEE DEEYVPSDAEGKASASRGGDGEDEEGAGSGEDDDDESSVDSADEPEDAEGELADLAKGGE MPIEELLAMYQRMAEQEEGDEGESNEEGGEEDEEDDDGGEEDEEGEEEEAERQGKKAKKA AGKKGKGGRRKKKQDAKEGGDEEEQEEDAGQNDKGEDEEEEEEEEEEAEEDEKEDEEEEE PRTPRTRRSRRSRSSRTAATAATAARGRGRGRRRSSRRRGAAVKQEEEEEEEEEEGETAG GEEGGQHDGAKSEAEGDGAGDAEEESGTDAETADRETRQDLLLLAGKRQDADGPSTRDEV EAVGRELETAQAVDATNTDTSNINTPVPFLLKCKLRPYQHIGLDWLATMHAKNLNGILAD EMGLGKTIQTIALLAHLAVTRNNWGPHLIVVPTSVMVNWEMELKKWCPAFKVLNYHGTIK ERREKRVGWTKPDQFHVCITSYKLAVQDAHIFKRKKWKYLILDEAHHIKNFESKRWQTLL RFTSRRRLLLTGTPLQNDLMELWSLLHFLMPRVFQSHQQFREWFGNPVREMVESTRAAKQ RDKERVSRLHKLLRPFILRRLKADVELQMPKKYEHVITCDLSRRQRELYDEFMSRTKTKE TIAAGNYLSVINILMQLRKVCNHPNLFAEPRVVSPLVLRPLRYEVPSLVIGALDDRDWFA AAPNPARVNLDLFGLALLHCELRGDVSLHADADAIRSLGLPVGFEIEREPPTEEEKNSGG ENYLDLLMRRRKQQRALLNHRAHINTLMCDRSAVYGDALRSAVTMPPRPVASISTTALSS YLAPPTATTTTTTSSDNTATTDTPNNTSNNAADPDILPLVQSVADRRAGLAAVVRRFSMA VEPARCPALDVAPTTVGGVRAVQKCMWSQPLRNRAARPTTTFQALVRDAAEEDRALVLPD RALIQYHCSKLQVLEKLLREKKAGGHRVLIFTQMAKMLDILEQFLAFHAFTYLRLDGSTP VVRRQQMTERFNRDSRLFCFILSTRSGGLGVNLTGADTVVFYDSDWNPTMDAQAQDRAHR LGQTRDVHIYRLVCAKTVEENILKKAQQKRQLGDIAIEGGAFTTEGLKSVKLMELFEGDS NVEDLGPVTGEDKKAKAATTAEAGAATDDGAATAGEGEEGFEQALLAAEDETDRQALQTA RQELSQELAEFDEDGTPVGSTSDTPKRKHPAAAAAAAAATSSAAATPTRGSKRAKASAPT QQTAEGDMAEQEAGAAFTSPEHEQQQQQQQQQQGRAGGAARSDVETDEEEIDPAKLLEEQ MKRLRGVEHHALNVLERYLSSQHERKLADARRAMDEKHRALCNLENRMRAGNDDGLSTEE EEELFYSEEKMQEALRAYMEATAQSEEAASPLYGPPQPPAHGSSEAMAPHVETAHWAQYR VAFMHFVPAAPDLTKRRKRFRKKYKDLQRRASRKGTNFMWQRTMDLGVRDISEKRARELG EKALHHGRGISASIFRRRDDKGGRYGIKMHRHPKRPVKSSGASKDKRDVDTNREAAPWTV EEDWTLLAAVRRHMCANSTVNWQLVADTMNVCTSFTGRPRTRLQCRDRYFNVLVNREDGR PPSKKKDDGKKKTKKKAKKEEPAKGQPVLTTQQLHEKDNRQSVIDFHRNVFTAIVKAHSS RAPAPPPPAASEEARKSQQAILDQARVGTESVVELTQKLNDDYLKARSAALMQRRQAHIQ AMKQAQAQNMPGRVAMQQQHQQQQQQQQQQQQQQQQLRGVPSQQQQQQQQQGRPGQPPAG MQQVVGVQNQQLQPQQQPQQHPQHTQHPQQQAGVNTGRHGAISGQRASIPGVRPQGQAPG GTNGSGAYAQSRAMPVGRAAGGGSVAQQQGRPLQQHPQQVPTSTMQQQRPMPMTSNPAQA RNMPSQGPAHTQQGQLRNVPARMPQQQAQIYSQAPASRVQGQMPVGQQQQQQQPQQQQPR GGATTAPVGNVPRGPTGMVQGGPSSSSQQTTPVRGAGTAPRQQQPLTHTSGAAGARGGVA GMSGQHQHQHQQQQQQQQPRGGVPVSRAMGQAPPSSSPQVMTQPAMPGPGGSTTAPTTGA YMPSARSTVGAGQPAPQYARPAVAGQGIGTASPHQAGTRYATAPMSRVPASTSVYSTAST APHPHMGSPMASSTGTIRPGGVRPMMGTAGATGSMASTVPTTMITSVGAGVSGATVPTSL PYGSSTTSTVPGRAYAQQPQQPGTYAYAPQSAGSSKAHTPKQMSRRTSMSTHAVPGSAYA TSSTAGPTGTAGAGAGGSGVQYNSASLLAYVRQHYSADPNFTYVVNVYNDKTMSEEAKVT EIQRWLQTAQTRSPARARTSSMGASSSSPHVMSRSASVSSTSRPMPQTQPGGPPTMQQQQ PQQQTQPQQQQQQLQQQQQPGAPYSTAPASGYTRQGQS NT seq 9297 nt NT seq  +upstreamnt  +downstreamnt atggcggacgacacaagcaaaccagcgtcggcgccatcgactgccgccacaacaacgcca gcggtggcgcagcagactggcgcacaagcagcgacgacggtgccggtcgaccaacccacc acggctactggaccaacaacaacggcagcgtcaacaaccgcagcaccaacaccaccatcc tccgcgaccactccatcaataacaacaacaacaccaccagcagcaacagcagcaccagca gcaacagcagcaccagcagcaacagcaatgacaacaacccttccgcaacacacagcacaa gcaaacaccaccgctgtggcccagccgtcaaccagcacgcctgctccacctgcatctgca cccgcggacaatcagcagcacacatctgcccctgtgcatccagtacaagcaggaaatgca cccgccacttcaaacacgcctacacccacagcaacaacggcaacagccgccacagcgtca gagacaacggcgactgccacacccacagtacctgccacaccaactgccgccacacagcct ggggatgacgcagagtctgcgagacaaggcaatgcctcgcaggcaccgaagcaggaaggt ggtgagggcgaggctggcccggtgtccgtgcgcgcgcgtgtgaaggagctgctgaacctc aagctgaaggtgttcttggaagcgcacgagttacggctacgggagctgttccttgtaagc acaaacaacagcctggccgacctgctacacgcccgcaccagcggcagccctgcgatggag gagtttgtggcgcgaaaccgcgttgacggcgtcaccaccgcccgcaccactgcggggaag cgcaagagcagcgcagacagcgggcagcccaccccaaagcgggccaccgttggctcgcgc tctgcctcgcccggcggcggcgcgtcgccacgacccgggtcgcccgtaaccggtggtggc gggcgcgggaagggccgtggcaagggcaagagccgcgcacgtggcaagacaccgcggtcg gcagggaaggcaggcaagagcagccgggctggcagcgcgcttgccgaggaggacgcgctg ccagaagcaacgccgacagcggccgtgcctgcgacaggcgtggccacaccaaaggcacgc cgtgcaaaggcagcagcagcaacagcagcagcaacgacaaccactccaacacccggcacg agccttgctgcccagcgcacaccacgaacccgcagcaaagccgcctctgttgctgttgat gcggaaaagcagcccgagcaggaaacagcggcggtggcagcggggaaggctggcacgcag gcgatcaccacgacaggcggggcggcaccaacagccacatcagcagcaccgaagaagatg aagctgaaggtgtcgctggacgaggcagcacggctgctgcacgcggagaaagagctgcag cagcgcatcagcgagaagaggcagcaaggggtgtgggttgacaagcgcctgcccaaggtt gccgagccggcccgcccaaaggtgcaccaggactacctgctggaggagatggcgtggctc agcgacgacttccgcatggagcgcaagtggaagattgcggtggcacggaagcttgcgcgc gctgtggtgcgctggcatgaggcgcgggcgcaggagggccggcgacgcatgcggcaggag ctcaaccggaagaggaaggtggctgcaaacgtggcgcgcgacgtgcaggtgttttggaaa cagatgctcaaggtcgtcgactacaagcacaagctggagctggacgctgtcaagacagat gccatgaacaaacacctggactacctggttggacagacgcagtcgtttacagaggatctc acgcgcgggctgcagggcaagtatgcagagtacggcaaaacggccatggccgcacacgcg cgccgcgcagccgccaagcacgcagctgcactacagcaagcaacaggccaacagatcacg ctcccgccggcgccgtcacaacaacagcaacagcagcagcaacagggcgcacccacacag gtggccgattcgacgacagcagctgcgggcgcaagtggtgacgacggtgccaacaaggca aagggcaaggctgcaaagaagcagcgcagcaagagagacgcagtgaagaaagaagaggag gacgaagagtatgtgccgtctgatgcagagggcaaggcatctgctagccgtggtggtgac ggcgaagacgaggagggagcaggcagtggggaggatgatgatgacgagagctctgtagat tcagcggatgagcccgaggatgcggagggtgagcttgctgaccttgccaagggcggggag atgccgattgaggaactgctggccatgtaccagcgcatggcagagcaggaggagggggac gaaggagagagcaacgaggagggtggcgaggaggacgaggaggatgatgatggtggtgag gaggatgaagagggtgaagaggaagaagccgaacgtcagggaaagaaggccaagaaggca gcagggaagaaggggaagggagggagaaggaagaagaagcaagacgccaaggaaggcggg gatgaggaggaacaagaggaggatgctggccaaaacgacaaaggagaggatgaggaggaa gaagaagaagaagaagaagaagcagaagaggacgaaaaagaggatgaggaggaagaagaa ccgaggacaccgcgcacgcgtcggtcgcggcggagtcggtcgagtcgcacagcagcaaca gcggcaacagcagcgcgcgggcggggccgtggccgccgccgcagctcccgtcgcagaggc gccgccgtcaagcaggaggaggaggaggaggaggaagaggaagagggggaaacagcagga ggagaagagggagggcagcatgacggcgcaaagtctgaggccgagggtgatggtgctggt gacgctgaggaagagagtggaacagatgcagagacagcggacagggagacgcggcaggat ctactgctgctggcaggcaaacgacaggacgctgatggccccagcacccgagacgaggtg gaagccgttgggcgggagctggagacggcgcaggcggtggacgccaccaacacggacaca agcaacatcaacacgcccgtgccgtttctgctcaagtgcaagctgcggccgtatcagcac attgggctggactggctggccaccatgcacgcgaagaacctcaacggcatccttgctgac gagatgggccttggcaagaccatccagaccattgcgctgctggcccacctcgccgtcacg cgcaacaactgggggccgcacctcattgtggtgcccaccagcgtgatggtgaactgggag atggagctgaagaagtggtgcccggcgttcaaggtcctcaactaccacgggaccatcaag gagcgtcgtgagaagcgcgttggctggacgaagcccgaccagtttcacgtgtgcatcacc agctacaagcttgccgtgcaggacgcgcacatcttcaagcgcaagaagtggaagtacctg attcttgacgaggcgcaccacattaagaactttgagtcgaagcggtggcagacgttgctt cgcttcacctctcgccgccgcctcctgctcacgggcacgccgctgcagaacgacctcatg gagctgtggtccctcctccactttctcatgccgcgcgtgttccagtcgcaccagcagttt cgcgagtggtttggcaaccccgtgcgggagatggttgagagcacgcgtgcagccaagcag cgtgacaaggagcgtgtttcccgcctgcacaagctcctgcggccctttatcctccgccgg ctcaaggcagacgtcgagctccagatgccgaagaagtacgagcatgtgatcacgtgcgac ctctcgcggcggcagcgtgagctctatgacgagtttatgtcccgcacaaagacaaaggaa accatcgcagcaggcaactatctgagtgtgatcaacattctgatgcagctgcgcaaggtg tgcaaccacccgaatctgtttgcggagccgcgtgtggtcagtccgcttgtgctgcggcct ctgcggtatgaggtgccttccctcgtcatcggtgcccttgacgaccgcgactggtttgct gccgccccgaacccggcacgcgtcaacttggacctgtttggactggcgctgctgcactgc gaactgcgcggcgacgtgtccctgcacgcggacgcagacgccattcgctcgctcgggctc ccggttgggtttgagattgagcgcgagccaccgacagaggaggagaagaacagcggcggc gaaaactacctggatttgctcatgcgccggcgcaagcagcagcgcgccctgctcaaccac cgcgcgcacatcaacacgctcatgtgcgaccgcagtgccgtgtacggtgacgccctgcgc tcggccgtgaccatgccgcctcgcccggtcgcctccatctcaaccacggcgctcagctcg tacctcgcccctccaaccgcaaccaccacaaccaccaccagcagtgacaacaccgctacc actgacacccccaacaacaccagcaacaatgccgcggacccggacattttgccgcttgtg cagagtgtggctgatcggcgagcagggctggctgctgttgtgcggcgattctccatggcc gtggagcctgcccgctgcccggcgcttgatgtcgcccccaccaccgtcggcggcgtgcgc gccgtgcagaagtgcatgtggtcgcagcccctgcgcaaccgggccgctcgccccaccacc actttccaagcgcttgtgcgggacgcagcagaggaggaccgcgcgctcgtgctgccggac agggcgctgattcagtaccactgctcgaaactgcaggtgctggagaagctgctcagggag aagaaggctggcggccaccgtgtgctcatcttcacgcagatggccaagatgctggacatc ctggagcagtttcttgcgttccacgcgtttacgtatctgcggctggacgggtccaccccc gtggtgcggcggcagcagatgacggagaggttcaaccgagactcgcgcctcttctgcttc atcctctccacgcgctctggcgggcttggcgtcaacctcacgggcgcagacacggtcgtg ttttacgacagcgactggaacccgaccatggacgcgcaggcgcaggaccgcgcccaccgc ctgggccagacaagggacgtgcacatctacaggctggtgtgcgccaagacggtggaggag aacattctcaagaaggcgcagcagaagcggcagcttggcgacattgccattgagggcggt gcgttcacgacagagggcctgaagagcgtcaagctgatggagctgtttgagggcgactcc aacgtggaggaccttggccccgtcacaggcgaggacaagaaggctaaggcagcaacaaca gcagaggctggtgctgcgactgacgatggcgctgccacggctggtgagggcgaggaaggt ttcgagcaggcgctattggcggcggaggacgagacagatcgccaggcgttgcagacggcg cggcaggagttgtcgcaggagctggccgagtttgacgaggacggtacgcccgtcggctca accagcgacacgccaaagcgcaaacaccccgcagcggcagcggcagcagcagcagcgaca tcgtcggcagcagccacaccaacgcgaggcagcaagcgcgccaaagcaagcgcgcccaca caacaaactgccgagggtgacatggcagagcaagaggcgggcgccgcgtttacgtcccca gagcatgagcagcagcagcagcagcagcagcaacaacaagggcgtgcgggtggcgcggcg cggagcgatgtggagacggacgaggaagagattgacccggccaagctgctggaggagcag atgaagcggctgcgtggggtggagcaccacgccctcaacgtgctggagcggtacctgtcg tcgcagcacgagcgcaagctggccgatgcccgccgcgccatggacgagaagcatcgcgcg ctgtgcaacttggagaataggatgcgtgcaggcaacgacgatggcctgtcgacggaagag gaggaggaactcttctacagcgaggagaagatgcaggaggcgctgcgggcgtacatggag gcgacggcgcagtctgaggaggccgccagcccgctgtacggcccaccgcagccgccggcg cacggcagcagcgaggccatggccccgcatgtggagacggcgcactgggcgcaataccgc gtggcgtttatgcactttgtgcccgctgcgcccgacctgaccaagcggcgcaagcggttc cgcaagaagtacaaggacctgcagcgtcgggcgagccgcaagggcaccaacttcatgtgg cagcgcacgatggacctgggcgtgcgggacatctcggagaagcgtgcgcgcgagcttggc gagaaggcgctgcaccacgggcgcggcatctccgcgtccatcttccggcggcgcgacgac aagggtgggcggtatggcatcaagatgcaccggcacccgaagcggcccgtcaagtcctcg ggcgcctccaaggataagcgggacgtggacaccaacagggaagcggcgccgtggactgtg gaggaggactggacgctgctggcagccgtgcgccggcacatgtgcgcaaacagcactgtc aactggcagctggttgctgacacgatgaatgtgtgcacgtcgtttacagggcgcccgcgc acgcggctgcagtgccgtgaccgctacttcaacgtgctggtgaaccgtgaggacgggcgc ccgccctctaagaagaaggacgatggcaagaagaagacaaagaagaaggcaaagaaggaa gagccagcaaagggacagccggtgctgacgacgcagcagctgcacgagaaggacaaccgg cagtctgtgattgacttccaccgcaacgtgttcacggccattgttaaggcgcattcctcg cgcgcgccagcgccaccccctccggccgcttctgaggaggcgcggaagtcccagcaggcc attctcgaccaagcacgcgtgggcacggagtctgtggtggagttgacgcagaagctgaac gacgattacctgaaggcgcgatctgcagccctgatgcagcggcgccaggcgcacatacag gcgatgaagcaggcccaggcgcaaaacatgccgggacgggtggccatgcagcagcaacat caacaacagcaacagcagcagcaacaacaacaacaacaacaacaacagctgcggggcgtt ccgtcacaacaacaacagcaacagcaacagcaagggcgaccaggacaaccaccggcagga atgcagcaagtggtgggcgtacaaaatcaacagctacagccacaacaacagccacagcag cacccacagcacacacagcatccacaacagcaagctggggtcaacacgggtcgccacggt gccatctctggccagcgcgcttccatacctggcgtccgacctcagggccaggcgcccggt ggcacgaatggcagcggtgcatatgcgcagtcgcgtgccatgccggtagggagagcagct ggtggtggcagcgttgcacaacagcagggccgccctctgcaacagcacccgcaacaagtg ccgacatcaacaatgcaacagcagcggccaatgcccatgacgagcaacccggcccaagcc cgcaacatgccgtctcaggggccggcgcacacccagcagggccagctgcgcaatgtgcct gcgcgcatgccccagcaacaggcgcaaatctactcacaggcgccagcatcgcgagtgcaa gggcagatgcccgttgggcagcagcagcagcagcagcagccacaacagcagcagccacgt ggtggcgcgaccacggcgcctgtgggcaacgtgcctcgcgggccaaccggcatggtgcag ggtggtccctcctcgtcgtctcagcagaccacacccgtgcgtggcgctggtacggcccca cgtcagcagcaaccgttgacccacacctccggagcagcgggtgcccgcggtggtgtggcg ggaatgtctggccagcaccagcaccagcaccagcagcaacaacaacaacaacagccgcgt ggcggtgttcccgtgtcacgggcaatgggtcaggccccaccgtcgtcgtcaccccaggtg atgacgcagccagccatgccgggccctggtggcagcacaactgcgccgaccacgggtgcc tacatgccgagtgctcgcagcacggttggcgcgggtcagccagcgccgcagtatgcccgc cccgctgttgctggtcagggtattggcacggcatcaccgcaccaggccggcacgcgctat gcgacggcacccatgtcgcgtgtgccggcatcaacgagtgtgtattcgacagcatccacg gcgccacacccgcacatgggcagccccatggcgagcagcacaggcacaatacggcccggt ggggtgaggccgatgatgggcactgcaggggcgactggaagcatggcgtcgaccgtgcca acaaccatgatcacatcagtcggtgccggtgtcagcggggccacggtgccaacgagcctg ccctacggcagcagcaccacctccacagtccccggccgggcatacgcccagcagccgcag cagcccggcacatatgcatacgcaccgcagtcggcgggttcgtccaaggcgcacacgcca aaacagatgtcacgccgcacgtcaatgagcacgcacgctgtacccgggagcgcatacgcg acgagcagtaccgcggggccaaccggtactgctggtgctggtgctggtggtagtggtgtg cagtacaactctgcctcgctgctggcatatgtacggcaacactacagcgctgatccaaac tttacctacgtcgtgaacgtgtacaacgacaaaaccatgtcggaggaagcaaaggtgacg gagatacagcggtggctgcagactgcgcagacacgctcccccgcgcgtgcccgcacgtca tccatgggcgcgtcttcatcgtcgccccacgtcatgtcgcgatcggcgagtgtgtcctcc acatcacggcccatgccgcaaacacagcccggcggcccaccgacaatgcagcaacagcaa ccacaacaacaaacacaaccacagcagcagcagcagcagctacaacaacaacaacagcct ggtgcaccgtacagcacagcgcccgctagcggttacacgcggcaggggcagtcttga

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