Salpingoeca rosetta: PTSG_06939
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Entry
PTSG_06939 CDS
T04136
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
sre
Salpingoeca rosetta
Pathway
sre03030
DNA replication
sre03410
Base excision repair
sre03420
Nucleotide excision repair
sre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PTSG_06939
03410 Base excision repair
PTSG_06939
03420 Nucleotide excision repair
PTSG_06939
03430 Mismatch repair
PTSG_06939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sre03032
]
PTSG_06939
03036 Chromosome and associated proteins [BR:
sre03036
]
PTSG_06939
03400 DNA repair and recombination proteins [BR:
sre03400
]
PTSG_06939
DNA replication proteins [BR:
sre03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
PTSG_06939
DNA Replication Termination Factors
ELG1-RFC complex
PTSG_06939
Chromosome and associated proteins [BR:
sre03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
PTSG_06939
DNA repair and recombination proteins [BR:
sre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
PTSG_06939
Check point factors
HRAD17(Rad24)-RFC complex
PTSG_06939
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_16
DUF815
AAA_14
AAA_24
AAA_assoc_2
bpMoxR
RuvB_N
AAA_30
AAA_7
AAA_11
RCF1-5-like_lid
DNAX_ATPase_lid
ResIII
AAA_5
ATPase_2
AAA_3
AAA_19
DEAD
BrkDBD
Gp44_lid
ABC_tran
nSTAND3
TniB
AAA_2
Mg_chelatase
T2SSE
Viral_helicase1
SRP54
SNF2-rel_dom
AAA_6
RNA_helicase
MCM
AAA_28
Motif
Other DBs
NCBI-GeneID:
16072900
NCBI-ProteinID:
XP_004992340
UniProt:
F2UF87
LinkDB
All DBs
Position
Unknown
AA seq
330 aa
AA seq
DB search
MTSSAPTTNLPWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTI
KACAKQLYGKAYKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAGFKLIILDEADAMT
NDAQAALRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVID
AEHIETTPAGIEALVKLASGDMRKALNILQSTFMAFNKVNDEGVYLCTGTPLPADIEAIV
EVMLNESFKTAFRKIMEIKTEQGLALQDILHDVHEFIHRLDIPTASRLLLLDRLAQIEER
LAYGANERAQLADLVGVFQVVRNQVVEAAA
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccagcgcgccaacaacaaacttgccatgggtggagaagtaccgcccggattcc
ctggaccagcttgtttcgcacaaggagattatcgacacaatccagcgatttgtggatgag
aaacggctgccccatctcttgttctacggcccaccaggaactggcaagacatccaccatc
aaagcatgtgccaagcagctctacggcaaagcatacaagagcatggtcttggagctcaac
gcctcggatgaccgcggcattggcgttgtccgcgagcagatcaagacgtttgccagcaca
aagacagtgttcagtgccggtttcaaactgatcatcttggatgaggcagacgccatgacc
aacgacgctcaggctgcccttcgtcgagtgattgagaagtacaccaagcacacccgtttc
tgtctcatctgcaactacgtgtccaagatctccccagctttgcaaagtcgatgcacgcga
ttccgatttgcgccgctggcaacagagcacatgatccagcaggtgcaacgtgtcatcgat
gcagaacacattgagacgacgcctgcgggcattgaggcgttggtgaagcttgcgtcgggt
gacatgcgaaaagccctcaacatcctccagagtacattcatggcattcaacaaagtgaat
gacgaaggcgtctatctgtgcacgggcacgccgcttcccgcagacattgaggccattgta
gaagtcatgctcaacgaatcgttcaaaaccgccttccgcaagattatggagattaagacg
gaacaggggcttgcgcttcaagacatcttgcacgacgtgcacgaattcattcacagattg
gacattcccactgcatcgcggctccttctcctcgaccgcctggcgcaaattgaggaacgg
ctcgcgtacggcgcgaatgagcgcgcgcagctcgcagatcttgtcggcgtcttccaggtc
gtccgaaaccaagtcgtcgaggccgcagcatag
DBGET
integrated database retrieval system
