Salpingoeca rosetta: PTSG_06987
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Entry
PTSG_06987 CDS
T04136
Name
(RefSeq) eIF4a
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
sre
Salpingoeca rosetta
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sre03041
]
PTSG_06987
03016 Transfer RNA biogenesis [BR:
sre03016
]
PTSG_06987
Enzymes [BR:
sre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTSG_06987
Spliceosome [BR:
sre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
PTSG_06987
Transfer RNA biogenesis [BR:
sre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PTSG_06987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
16072955
NCBI-ProteinID:
XP_004992391
UniProt:
F2UFD8
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MAAFDRFGMMPEIMEATQHLGWELPTDIQAEAVPLILGGGDVLMAAETGSGKTGAFCMPV
IQIVAETLRAGTRTSTAAATAAPRRAGRMSVATREANFAVSADGLLCQSRAEFQWQGGRG
ELAATKGAVVKNGVYLGDAYEIPSSLRGQPLFPACTVKNAELKFNFGAQPFKHSPQGGFK
AMNNQPDANVTTATAAGGASDTWKKSKGPVALILEPSRELAEQTRDQIRALSSFIKDVRV
RDCLMIGGTNARDQLKALERGVDVVVGTPGRIEDFVKTGKLDLNRVRFFIVDEVDALLSQ
GHEQLLERLYNKMPKQTAGNRLQMVVCSATLHSPAVKKLADKLMYHPVWVDLKGLDSVPD
TVHHVVVRVDPNADKSWQKKPAALRTDGVHAGDNTRPANMTAETTSEAIKILKFMYTLKA
IDAHNMEQVIVFCRTRLDCDNLEKYLQAQDSPGPAHKYPTRCLHGSRGPERRQNLEAFKN
GEARILICTDVAARGIDITGIPYVINVTLPDEKENYVHRIGRVGRADRMGLAISLVATTQ
EKVWYHTCPSKGKGCHNTRLKSQGGCTIWYDEPQLLADIQEHLGVVIPTSDASFKIERSE
FDGKVVYGEKRNANAYAFKGHADLLAPSVAELSDLEARAQTSFLELQYKGTARV
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtttgaccggtttggcatgatgccggaaatcatggaggcgacgcagcacctc
ggctgggagcttcccacagacattcaagccgaggccgtgcctctcatcttgggcggtggt
gacgtgctcatggcggccgagacaggcagcggcaagactggcgccttctgcatgcctgtg
attcagattgttgcggagacactgagggctggcacgcgcacgagcacggccgccgccacc
gctgcgccgcgtcgtgccggtcgcatgagcgtggccacgcgcgaggcgaacttcgctgtc
agcgccgacggcctgctgtgccagagccgcgccgagttccagtggcagggcggccggggc
gaactcgcagccacaaaaggtgcagttgtcaagaacggggtgtatcttggcgatgcgtac
gagatcccatcgtctcttcgtggacagccgctctttcctgcgtgcaccgtcaagaacgca
gagctcaagttcaactttggcgcacagcccttcaagcacagcccacagggtggcttcaaa
gcgatgaacaatcagccagacgcaaacgtcacaaccgccaccgctgcaggtggggcgagc
gacacatggaagaagtccaagggccctgtggccctcatcctggagccatcacgtgaactc
gcggagcaaacgcgcgaccagatccgtgcgctgtcgtcgttcatcaaagacgtgcgtgtg
cgggactgcctgatgattggtggcaccaatgcccgggaccaactcaaggcccttgagcgc
ggtgttgacgtcgttgttggaacaccgggccgcatcgaggactttgtcaagacaggaaaa
ctcgacctcaatcgcgttcgcttcttcattgtggatgaggttgacgccctcctctcccag
ggccacgaacagctgctcgagcgactctacaacaaaatgccgaagcaaacggcaggaaac
cgcctccagatggttgtgtgttctgcaacgctccattcgccagccgtgaagaagcttgca
gacaagctcatgtaccacccggtttgggttgatctcaagggtctcgactctgtgccggac
accgtccaccacgtcgtcgtgcgcgtcgacccaaatgcagacaagtcgtggcagaagaag
cctgctgcgctgcgaacggacggcgtgcatgcgggtgacaacacgcgaccagcgaatatg
acagcagagacgacgagcgaggcaatcaagatccttaagttcatgtacacgctcaaggcg
atcgacgcacacaacatggaacaggtgattgtgttctgccgcacgcgtcttgattgcgac
aacctggagaagtatcttcaagcgcaggacagccccggccccgcccacaagtacccaacg
cgctgtttgcacggcagccgcggtcccgagaggcggcagaacctcgaggcattcaagaat
ggcgaggcgcgcatcctcatctgcacggacgtggcggcgcgcgggattgacatcacgggc
attccgtatgtcatcaacgtcacgctccccgacgagaaggagaactacgtgcatcgcatt
ggccgtgttgggcgagcagaccgcatgggactcgcaatctccctcgtcgcaacaacacag
gagaaggtgtggtatcatacgtgcccatcgaagggcaagggctgccacaacacgcggctc
aagtcccagggtggatgcaccatctggtacgacgaaccgcagctgctggctgacattcag
gagcaccttggtgttgtcatcccaacatctgatgcgtccttcaagattgagcgatcagag
tttgacgggaaggttgtgtatggtgagaagcgcaacgcgaatgcatacgcgttcaaaggc
cacgctgatctgttggcgccgtccgtcgcagagctctccgacctcgaggcccgcgcacag
acgtcgtttctggagctgcagtacaaaggcacggcgcgtgtgtga
DBGET
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