Salpingoeca rosetta: PTSG_07079
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Entry
PTSG_07079 CDS
T04136
Name
(RefSeq) WD40 repeat-containing protein SMU1
KO
K13111
WD40 repeat-containing protein SMU1
Organism
sre
Salpingoeca rosetta
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sre03041
]
PTSG_07079
Spliceosome [BR:
sre03041
]
Complex B
Other components
Complex B specific factors
PTSG_07079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
NBCH_WD40
WDR90_beta-prop_4th
LisH_TPL
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Ge1_WD40
PROPPIN
WDR54
WD40_RFWD3
Beta-prop_IP5PC_F
PQQ_2
Beta-prop_WDR75_2nd
Nucleoporin_N
Beta-prop_NOL10_N
VPS8_N
Motif
Other DBs
NCBI-GeneID:
16073061
NCBI-ProteinID:
XP_004992494
UniProt:
F2UDZ9
LinkDB
All DBs
Position
Unknown
AA seq
544 aa
AA seq
DB search
MSSTSSSKRRTSSEGSSTSTTNNNGSLEIESGDVVRLVLQFLKENNLMQSYNALLEETGV
SMNVIDNLDTFLSDVRHGHWDTILKTVTHIKLPDKTLMLLYEQIVLELIEMKEFGAARSV
LRQTDPMIKLKKTDPDRYMRLEHMMAQDFFDPRQAYGEGGSRESRRAALAEALAGDVTVA
PPSRMLTLLQQAVKWQQHTGILPSGASIDLFRGKTAVKELEEERMVARVHKTIKLGGKSH
CESAAFSPDGKFLVSGSVDGLIEVWNHKSGKLRKDLRYQAEERIMMMETPVLALAFSRDS
EMLVSASQAGKMRVWKVSTGQCLRKYERAHAEGITCVAFSRDNSQIASSSFDHTVKIHGL
RSGRMMKEFRGHKSFVNSVCYSMDYSRLISASSDGTVKIWHIKSGECVSTLDSFGGPTTT
GLTVNSAQLVPHQPETLIVCNRSNTLYMVNFKGQVLRSMTNKQKKSGDFVSCLVSPRGNF
VYALAEDGQLHAFVQETGDLRLTTKAHARGPIGVLHHPHENIVCTYGEDGAMHLWRPAQA
ATSL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcacgtcctcatccaagaggcggacctcaagtgagggcagcagcacaagcacc
acgaacaacaatggctctctggagattgagagcggggacgttgttcgcctcgtcctgcag
tttctcaaggagaacaacctcatgcagtcctacaacgccttgctcgaggaaactggcgtg
agcatgaatgtgattgacaacctggacacgtttctgtcagatgtgcggcatggtcactgg
gacaccattctcaagactgtcacgcacatcaagctgccagacaagactttgatgctcctt
tacgaacaaattgtgcttgaattgatcgagatgaaggagtttggggctgcccgctcagtg
ctgcgtcaaacagaccccatgatcaaactcaagaagacagacccagacagatacatgcgg
ctggagcacatgatggcacaggacttcttcgaccccagacaggcatacggcgagggcggc
tcaagggagagcaggcgcgcagctcttgctgaagcgctggcgggcgatgtgacggttgcg
ccgccatcgcgaatgctcacactcctgcagcaggccgtcaagtggcagcagcacacaggc
atcctcccctcaggcgcatccatcgaccttttccgcgggaaaacggcggtgaaggagctg
gaggaggagcgcatggtggcgcgtgtgcacaaaaccatcaagcttggcggcaaatcccac
tgtgagagtgcggcgttttcgccggacgggaagttcctcgtcagcggcagcgtggacggg
ctcatcgaggtgtggaatcacaaatctgggaagctgcgcaaggatctcagataccaggca
gaggaacgcattatgatgatggagacgcccgtgcttgcgctcgccttcagccgcgacagt
gaaatgctcgtctccgcttcacaggccggaaaaatgagggtgtggaaggtgtcgacgggc
cagtgtttgcgcaagtacgagcgagcgcatgcagagggcatcacgtgtgttgcgttttcc
cgcgacaacagccaaattgcatcgtcgtctttcgaccacaccgtcaagatccacgggctg
cggtctgggcggatgatgaaagagttccggggccacaagtcgtttgtcaactccgtgtgc
tattccatggactactcccgtctcatcagcgcaagctcggacggcaccgtcaagatctgg
cacatcaagtctggggagtgcgtgtcgacgcttgattcctttggcgggcccaccacaacg
gggctgaccgtcaacagcgcacagctcgtgccgcaccagccagagacactcattgtctgc
aaccggtcaaacaccctctacatggtcaacttcaagggccaggtgcttcgctcgatgacc
aacaagcagaagaagagtggcgactttgtgtcgtgtctcgtctctccgcgtggcaatttc
gtgtatgccctcgccgaggacggacagctgcacgcatttgtccaggaaacaggcgacctg
cgtctcaccaccaaggcgcatgcccggggcccgattggcgtgctgcaccacccgcacgag
aacattgtgtgcacatatggggaagacggcgcaatgcacctctggcgcccggcacaggca
gccacctccctctag
DBGET
integrated database retrieval system
