KEGG   Salpingoeca rosetta: PTSG_07213
Entry
PTSG_07213        CDS       T04136                                 
Name
(RefSeq) skd/vacuolar sorting protein
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
sre  Salpingoeca rosetta
Pathway
sre03250  Viral life cycle - HIV-1
sre03272  Virion - Hepatitis viruses
sre04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    PTSG_07213
   03272 Virion - Hepatitis viruses
    PTSG_07213
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    PTSG_07213
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sre04131]
    PTSG_07213
   03400 DNA repair and recombination proteins [BR:sre03400]
    PTSG_07213
Membrane trafficking [BR:sre04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    PTSG_07213
DNA repair and recombination proteins [BR:sre03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    PTSG_07213
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_5 AAA_16 TIP49 AAA_22 RuvB_N AAA_14 DUF815 AAA_2 RNA_helicase AAA_24 NPHP3_N AAA_18 AAA_17 IstB_IS21 ATPase_2 AAA_7 AAA_25 Parvo_NS1 AAA_33 nSTAND3 Mg_chelatase AAA_28 NACHT MCM Sigma54_activat PhoH Viral_helicase1 TPR_IF140_C ResIII bpMoxR
Other DBs
NCBI-GeneID: 16073206
NCBI-ProteinID: XP_004992635
UniProt: F2UEE0
LinkDB
Position
Unknown
AA seq 435 aa
MSSEITKKGIEVAKKAIELDRSQEYEQALALYKSASEYLLKGMQYESSQVKQIIGKKCSE
YLERAEKIDSMLKDGTTKKAVASGGEGTGEDDDDDADASGLNPERKQLRQALESAVVIEK
PNIAWKDVAGLDSAKEALQEAVILPMRLPQMFKGKREPWRGILLYGPPGTGKSYLAKAVA
SEANNSTFISVSSSDLVSKWQGQSERLVKELFEMAREKSPCIVFVDEIDSLCSARSDNES
ESSRRIKTEFLVQMQGVGSQNDGILVVGATNIPWQLDSAIRRRFEKRIYIALPDTEARCK
MFELHIKGVRNTLQPHDYNTLAHKSEGYSGSDICNVVREAIMMPVRKVQHAQAFKKCDEN
GYPTPSGAFWTPCSPSDRDPTKQFMSWQDMPAEAIVEPPVDMRDMVQALERTKRSVDPKD
LGKIEEFTRSFGQDI
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgtcttcggagatcaccaagaagggcatcgaggtggccaagaaggccatcgagcttgac
aggagtcaggagtacgagcaggcattggcgctgtacaagtcagccagcgagtacctgctc
aagggcatgcaatatgaatcgtcgcaggtgaagcagatcatcggcaagaagtgcagcgag
tacttggaacgcgcggaaaagatcgattccatgttgaaggatggcacgacaaagaaagcg
gttgcctctggtggggaagggactggagaggacgacgacgacgatgcagacgcctcgggc
ctgaacccggaacgcaagcagctgcgccaggcgctggagagcgcggtggtcattgagaag
cccaacattgcatggaaggatgtggcgggccttgactctgccaaggaggccctgcaagag
gctgtcatcctgcccatgcggctgccacagatgttcaagggcaagcgcgaaccgtggcgc
ggtatcctcctctacgggcccccaggcacaggtaaatcgtaccttgcaaaggccgttgca
tcggaagccaacaactccacattcatctccgtctcctcctcagacctcgtctccaagtgg
cagggccagtccgaacgacttgtgaaggagctgtttgagatggcgcgagagaagtcgccg
tgcattgtgtttgtggacgagattgactcgctctgctccgcccgctcagacaatgagagc
gagagctcccgccgcatcaagacagaattcctcgtccagatgcaaggtgtgggcagccag
aacgacggcatcctggttgttggcgcgacgaacattccctggcagcttgactctgccatc
cgccgccgctttgagaagcgcatctacattgcgctgccggacacggaggcccgatgcaag
atgtttgagctgcacatcaagggcgttcgcaacaccctccagccacacgactacaacacc
ctcgcccacaaatctgaagggtactcggggtctgacatctgcaatgtggttcgcgaggca
attatgatgcccgtgcggaaggtgcaacacgcccaggcgttcaagaagtgtgacgagaac
gggtatccgacgccctctggagcgttctggacgccgtgctcccccagcgaccgcgaccca
acaaagcagtttatgtcgtggcaggatatgcccgcagaggcaattgtcgagcccccggtc
gacatgcgagacatggtgcaagcgcttgagcgaacaaaacgcagcgtggacccgaaggac
cttggcaagattgaggagtttacacgcagctttggacaagacatctag

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