Salpingoeca rosetta: PTSG_07671
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Entry
PTSG_07671 CDS
T04136
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sre
Salpingoeca rosetta
Pathway
sre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTSG_07671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_07671
03041 Spliceosome [BR:
sre03041
]
PTSG_07671
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PTSG_07671
Spliceosome [BR:
sre03041
]
Complex B
Other components
Prp19-related factors
PTSG_07671
Complex C
PTSG_07671
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
ARM_TT21
TPR_12
TPR_2
TPR_IF140_C
DUF3295
Motif
Other DBs
NCBI-GeneID:
16072030
NCBI-ProteinID:
XP_004991470
UniProt:
F2UHF7
LinkDB
All DBs
Position
Unknown
AA seq
832 aa
AA seq
DB search
MSYIQQEDVVFEEDILRNPYSVKHWIRYLDHKEKADPKVRFNIYERALQQMPGSYKLWYR
YLAERRTYAQRFPPTHHTRDALEETFVRALAYMHKMPRIWLEYLEAMMETGKVTATRRAF
DEALRALAITQHHRIWPLYLQFVRSINVPETAVRVYRRYLMVEPEDAEEYVDYLISIKRF
DEAATQLAQIVNKNRYKSKRGKSNHLLWVELCQLISKHPEHIHTLRVEPIIRGGLRRYTD
MIGSLWCSLANYHIRSGNFEKVRDIYEEGLAAVSTVRDFSAIFEAYAEFEETSLNAMLED
EEQDEVELELRMARYENLMERRPLLLSSVLLRQNPHNVDEWLKRVMLFEASPKEMIRTFT
EAVQTIDYQQAVGKPQQLWIEFAKLYESNQQLSQARAVFDRAVQQPFRKVDDLADVWCAF
AEMEIRNKNYKQALSHLRRATHVPSRKKAAVDNNSVQMRVHRSLKLWSMYADLEESLGTF
ETTKAVYNRMIELRVANPQTILNFASFLEEHKYFEEAFSAYEKGLGLFRWPVVYEIWNVY
LTKFIQRYGGRKLERTRELFEQCLAHVPDKFAKVLYLKYAQFEEDHGLARHAMAVYERAT
KAVRKPERYEMWQLYIKRAAHIFGVTHTRALYAKALEDDHLADKDTRSIALQFASLETKL
GEIDRARAIYSHASQVADPRSANKYWSAWNDFEVRHGNEDTFREMLRIKRSVAAQFNTAA
NTSVFRAASDASKTRPKTTAAQDNAMAAAEEEASRKQSAKEGLAVKFVRSTEEKSKNTDE
IALDDDDDDDDDEEDADVASGKPRQEIQERPVPEQVFGSLVGAKARFQQASE
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgagctacatccagcaagaggatgttgtctttgaggaggacatcctccgcaatccatac
tctgtcaagcactggattcggtacttggatcacaaggaaaaggccgatccaaaagtgcgc
ttcaacatttacgagcgcgctctgcagcagatgcccggaagctacaagctgtggtaccgc
taccttgccgagaggcgaacgtatgcgcagcgcttcccgcccacgcaccacacgcgcgac
gctctggaagagacgttcgtgcgcgcactcgcgtacatgcacaagatgccacggatctgg
ctggagtatctcgaggcgatgatggagacaggcaaggtgacagcaacacgccgcgccttt
gacgaagccctcagggcgctcgccatcacgcagcaccaccgcatctggcccctctacctg
cagtttgttcgctccatcaacgtgcctgagacggctgttcgtgtgtaccgccgctacctc
atggtcgagcctgaggatgcggaggagtatgtcgactacctcatctccatcaagcgattc
gacgaagcagcaacacagctcgcacagattgtgaacaagaaccggtacaagagcaagcgg
ggcaagtcgaaccacctgctgtgggtggagctctgtcagctcatcagcaagcacccagaa
cacatccacaccctcagggttgagccgattatccggggcggactgcggcggtacacggac
atgatcgggtcactctggtgctcgctcgcaaactaccacatccgaagcggaaactttgag
aaggtgcgggacatttacgaggaagggctggcggctgtcagcaccgtccgcgactttagc
gccatcttcgaggcatacgccgagtttgaggagacatcgctcaacgccatgcttgaggac
gaagagcaagacgaggttgagcttgagctgcggatggcgcggtatgagaatctgatggag
cgacggccgcttctcctcagcagtgtcctcctgcgccagaacccgcacaacgtcgacgag
tggctcaagcgcgtcatgctgtttgaggcatcgccaaaggagatgatccgcacgtttacg
gaggcggtgcagacgattgactaccaacaggcggtgggcaaaccgcagcagctgtggatt
gagtttgcaaagctctacgagtcaaaccagcagctctcccaggcgcgcgccgtctttgat
cgcgccgtccagcaacccttccgcaaggttgacgacttggccgacgtgtggtgcgcattc
gctgagatggagatcaggaacaagaactacaagcaagcactgtcgcaccttcgccgggcc
acgcacgtgccatcacgcaagaaggcggcagtggacaacaacagcgtgcagatgcgcgtg
caccgttccctcaagctctggtccatgtacgccgatctggaggagtcgctcggcaccttt
gagacgaccaaggcggtgtacaaccgcatgattgagctgcgtgtggccaatccacagacc
atcctcaactttgcgtcgttcttggaggagcacaagtactttgaggaggcgttttccgcc
tatgagaagggcctgggcctgttccgctggcctgtcgtctacgaaatctggaacgtttac
ctcaccaagttcattcagcgttatggcggccgcaagttggagcgcacgcgcgagttgttt
gagcagtgtcttgcgcacgtgccggacaagtttgcaaaggtgctctacctcaagtacgcc
cagtttgaggaggatcacggtctcgcccgtcacgccatggccgtgtacgagcgcgccacc
aaggccgtccgcaagcccgagcgatacgagatgtggcaactgtacatcaagcgtgctgcc
cacatctttggcgtgacgcacacacgcgctctgtacgccaaggcgcttgaagacgaccac
cttgcagacaaggacacgcgttcgattgcgctgcagtttgcgagtcttgagacgaaactc
ggcgagattgaccgtgcccgcgccatctactcgcacgcgtcgcaggtggctgacccgcgg
tccgccaacaagtactggtctgcctggaacgattttgaggttcgccacggcaatgaagac
acgttccgtgagatgcttcgcatcaagcggagtgtggcggcgcagttcaacactgccgcc
aacacgtctgtgttccgggccgccagcgacgccagcaagacgcgacccaagacgacggcg
gcacaggacaacgccatggccgctgcggaggaagaggcgtcacgcaagcaaagcgccaag
gaagggcttgctgttaagtttgttcgctccaccgaggagaagagcaagaacaccgatgag
attgcccttgacgacgacgacgacgacgacgatgatgaggaggatgcggacgtggcctcg
ggcaaaccacgacaagagatccaagagcggcctgtgccggagcaagtgtttggttccctt
gtgggggccaaggcacgcttccagcaggcgagcgaatga
DBGET
integrated database retrieval system
