Salpingoeca rosetta: PTSG_08233
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Entry
PTSG_08233 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
sre
Salpingoeca rosetta
Pathway
sre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTSG_08233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sre03041
]
PTSG_08233
Enzymes [BR:
sre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTSG_08233
Spliceosome [BR:
sre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PTSG_08233
Complex C
U5 SnRNP specific factors
PTSG_08233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF3698
DUF3439
Motif
Other DBs
NCBI-GeneID:
16071819
NCBI-ProteinID:
XP_004991258
UniProt:
F2UID7
LinkDB
All DBs
Position
Unknown
AA seq
777 aa
AA seq
DB search
MSRRDDEDMDPRSKRAKVADDYDHHHRSSSSSRRDRDRDDDDGRDRRDRDRRDRDRDRDR
EYHRSTSTSSSRRDRDRDRDRNRDRDRARDDRADRDDRSRRDRHRDRDEDRDRRDRDRDR
DRDRDRDTRESRDRERSRDKDADKDRRSRDRSPSRGGDTRKSSGLAPSSATTAATTTTTA
TSLTKSSTSDSNNGTKVPLSLEELLEKKKKEREENAKPKFLSKKERQEAALRRRQEQVAA
QRAKMEEQRKERERLDREARMIARAARHSDGNATAADASAGADDSVDKEREQELQAIKDR
YFGKHTEKRKIRRMNEKKFVFDWEGTDDTSVDHNPLYKEVHEAQLFGRGHLAGIDVSSQK
KEKGKFYEDMLERRRTEVQKEQEDRRLRKLRQKKQKQLFDERHWSEKPLADMTKRDWRIF
REDYNITTTGGRIPSPLRFWSESGLDPRILEIIDDLGFKEPTPIQRAALPIGLTNRDICG
VAETGSGKTLAFVLPLLQWILSLPKLEREQDIDNGPYAIILAPSRELVQQIEEQTRKFSD
PLGVRTVAVIGGASREEQGFQLRQGCEVVIATPGRLIDVLENRYLVLNQCTYVVMDEADR
MLDMGFEPAVQQILEHVPVTNQKPNTDEAEDEAFLLQDIKNKNKYRQTVLFTATMPPAVM
KLANTYLRRPATIRIGTVGKPVDRVEQRMILTTEQNKRNELVKILRSEPEPPIIIFVNQK
KGCDVLARSLEKMGYRAATLHGGKGQDVREHALASLKEGYKDILVATDVAGRGIDIP
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagagacgacgaagacatggaccccaggtccaagcgcgccaaggtggcggac
gactacgaccaccaccaccgcagctcctcatccagcaggcgcgaccgcgacagggacgac
gacgacggtcgtgatagacgtgaccgtgaccggcgtgacagggacagggacagggacagg
gaatatcatcgcagcaccagcaccagcagtagccgccgtgaccgcgaccgtgaccgtgac
cgtaaccgcgaccgtgatcgtgcccgtgatgatcgtgccgaccgtgatgaccgtagccgc
agagacaggcaccgcgatagggatgaagaccgcgacagacgcgacagagacagagacagg
gaccgcgaccgtgaccgcgacacgagggagagccgtgacagggagcgttcgcgtgacaag
gacgcagataaggaccggcgcagccgtgaccgctctccaagtcgtggaggtgatacgcgc
aagagcagcgggctggccccatcgtcagcgacaacagcagcaacaactacaactacagca
acatccttaacgaagagcagcacgagcgacagcaacaacggcacaaaggtgccgctgtca
cttgaagagctgctggagaagaagaagaaagagcgtgaggagaatgcaaagccaaagttc
ctgagcaagaaggaacggcaagaggcggctctccgtcgccgccaggagcaagtcgccgca
cagcgggcaaagatggaggaacagcgcaaggagcgcgagcgcctggaccgcgaagccagg
atgattgcacgcgcggcccgccattccgatggcaacgcgacggctgcggacgcctctgcc
ggtgcagacgacagcgtggacaaagagcgcgaacaggaactgcaggccatcaaggaccgg
tactttgggaaacacacggagaagcgcaagattcgccgcatgaacgagaagaagtttgtg
tttgactgggagggcacggacgacacatctgtggaccataacccactgtacaaggaagtg
cacgaggcgcagctgtttggccgcggccacctcgccggcatcgatgtctcctcccaaaag
aaggagaaaggaaagttctacgaggacatgcttgagcgccgtcgcaccgaagtgcagaag
gaacaggaggaccgccggctgcgcaagttgcgtcagaagaagcagaagcagctgtttgac
gagcgccactggtccgaaaagccgctggcggacatgacgaaacgcgactggcgcatcttc
cgggaggactacaacatcacgaccaccggcggccggatcccatcgccgctccgcttctgg
tcagaatccggactcgacccgcgcatcctcgagatcatcgacgaccttggcttcaaggag
cctacgccgatccagcgtgctgcgctgcccatcggcctcaccaaccgcgacatttgcggc
gttgcggagaccgggtccggtaaaacgctcgcctttgtcctcccgctcctccagtggatc
ctctccctgccaaaactcgagcgcgaacaggacattgacaacggcccgtacgcgatcatc
ctggcgccgtcgcgcgagctggtgcagcagattgaggagcagacgcgcaagttctcggac
ccgctcggcgtgcgtactgtcgccgtcattggcggtgcgagcagggaggagcaagggttc
cagctccggcaggggtgcgaggtggtgattgccacgcccggccgtctcatcgacgtgctt
gagaacagatacctcgtcctcaaccagtgcacgtacgtcgtgatggacgaggctgaccgc
atgctcgacatgggctttgagcccgccgtacagcagattctcgaacacgtccccgtcaca
aaccagaagccaaacacagatgaagccgaggacgaagcgtttctgctgcaggacatcaag
aacaagaacaagtaccgccagacggtgctgttcacagccaccatgccgcccgctgtcatg
aagctcgccaacacgtacctgcgccgcccagccaccatccgtattggcaccgtcggcaaa
cccgtcgaccgcgttgagcaacgcatgattctgacaacggagcagaacaagcgcaacgag
cttgtgaagattcttcgctccgagcccgagccacccatcatcatctttgtcaaccagaag
aaggggtgcgacgtgctggcgcgctcgctggagaaaatgggctaccgtgctgccactctc
cacggcggcaagggccaggacgtccgtgagcatgcgcttgcgagcctgaaggaaggatac
aaggacattctcgtggcaacagatgtggccggtcgtggcattgacattccgtaa
DBGET
integrated database retrieval system
