Salpingoeca rosetta: PTSG_08854 Help Entry PTSG_08854        CDS       T04136                                  Name (RefSeq) uncharacterized protein   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism sre  Salpingoeca rosetta Pathway sre03018   RNA degradation Brite KEGG Orthology (KO) [BR:sre00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     PTSG_08854  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sre03019]     PTSG_08854    03012 Translation factors [BR:sre03012]     PTSG_08854 Enzymes [BR:sre01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      PTSG_08854 Messenger RNA biogenesis [BR:sre03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      PTSG_08854 Translation factors [BR:sre03012]  Eukaryotic type   Initiation factors    Initiation associated factors     PTSG_08854 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  OB_NTP_bind HA2_C Helicase_C DEAD HA2_N AAA_22 NACHT nSTAND3 AAA_19 ATPase Myosin_head Rad17 Motif Other DBs NCBI-GeneID:  16070795 NCBI-ProteinID:  XP_004990241 UniProt:  F2UKW6 LinkDB All DBs Position Unknown AA seq 1022 aa AA seqDB search MGYRGRSAGYNRGGGRGRGGGGRGRGRGGRGRGGRGGRGGGGGGDGGDRPPPGLRGKDLG LWYARRGREKKEKIEESTRAQVRLTREQESSIQRVLGDGRDLDLPRADPFRTKHYHDAFD RPVPALPKDEAAAVSKQIAEDHTAKTKNASFERLKPFRERLPSFKMRAEVLRAVRDNQVI VISGETGCGKTTQVPQFILDDWIQANKGADCRIVCTQPRRISATSVAERVAAERGERCGG DTSSTGYSIRLDSKLPRTRGSITFCTTGILLRRMVSDPMLEGISHVILDEIHERDILSDF LLIILKDLLPNRPDLRVILMSATVNAETFAAYFNNATMLEIPGFAYDVEEIFLEDFIEKT RTQIAPPSRSPRRLRGEEREKFEEEQDNYDEFLHSIQPKYSRATLDSLYNFNANDQIDID LVMGVIEHIDSQAAGAVLCFLPGWGEISDLHKKLTQSPRFGNASKYWVLPLHSMIPPHEQ RKVFDNPPAGVRKIVLSTNIAETSITIDDVVYVINTGKAKEKSYDATNQISALQAEWISR ASCRQRRGRAGRVQEGVCYHLFTCYHHRNMKEYQVPEILRTSLEELCLQIKMLRLGLVRP FLAKALDAPDDKTVGQALTLLHNLDALDSKENLTPLGYHLSRLPVNPRIGRMIIFGSLFE CLDPVLTIAASLSFKDPFVMPINRQAEVDRVKKEFAGDSKSDHIAFLRAFHGWEQAWREH RQREYCWDNFLSGSTLKMIRDMKTQFLNLLQDIGFVGRTREAISKCNINSRNEKLVVAVL CAGLYPNVASVYHSHGKAFGKRPPKLKTREDGTVALHPKSVLADETVIPTKWLVYHHKMK TVKIYLYDASMIPPFPLIFFGGDVKVTREGENELIAVDDFIKFHSPVNTARLVQGLKVKL DQVLSRKIDDPRLDIQETMGTLIPVIVDLITTEDVSERDYLRQRRRAEDEYYRARDKSRP SSSSSSSSRGGRGGRGGGYGRGRGRGGYGRGRGGRYGGASYRDDDDDEDTARANLEEDPY WD NT seq 3069 nt NT seq  +upstreamnt  +downstreamnt atgggatatcgtggacgaagcgcaggctacaaccgcggcggcggacgtggccgcggcggt ggtggtcgtggtagaggccggggcggtcgcggcagaggaggtagaggtggtcgtggtggc ggcggtggcggagatggcggtgatcgccctccaccaggacttcgcggcaaagaccttggc ttgtggtatgcgcgtcggggccgcgagaagaaggagaagattgaggaaagcacacgtgca caagtcaggctgacgcgcgagcaagagagcagcatccagcgtgtgctcggcgacggccgt gacctcgacctcccgcgtgctgacccgttccgcacgaagcactaccacgatgcattcgac cggcccgtccccgcgctgcccaaggatgaggccgctgctgtctccaagcagattgcagag gaccacaccgccaagacaaagaacgcgtcattcgagcgcctgaagcccttccgcgaacgt cttccctcgtttaaaatgcgtgcagaagtgcttcgcgctgttcgcgacaatcaagtcatt gtcatctctggcgagacagggtgcggcaagactacgcaggtgccccagttcatcctcgac gactggatccaggccaacaaaggggccgactgccggattgtgtgcacgcagccgcggcgc atcagcgcaacatctgttgccgagcgcgtcgctgccgagcgcggcgagcggtgcggtggc gacacctcctccacaggctactcgatccgccttgacagcaagctgccgcgcacgcgtgga agcatcacgttctgcaccaccggaattctcctccgcagaatggtgtcagaccccatgctg gagggcatcagtcacgtgattcttgatgagattcacgagcgcgatattctgtccgacttt ctgctcatcatcttgaaggacctccttccaaaccgcccagacctcagggtgattttgatg tctgcgacggtgaatgcagagacattcgctgcctacttcaacaacgccaccatgcttgaa attccaggctttgcgtacgatgtggaggagattttcctggaagattttattgagaagacg cgaacgcagattgccccgccatcgcgctcgccacgacggctgcgtggagaggagagggag aagtttgaggaggagcaggacaactacgacgaattcctgcacagcattcagcccaagtac tcccgagccacgcttgattccctctacaacttcaacgcgaatgaccagattgacattgac ctggtgatgggggtgattgagcacattgacagccaggcggcaggcgccgtgctctgcttc ctcccgggctggggagagatctcagaccttcacaagaaactgacgcaatccccgcgtttt ggaaacgcctccaagtattgggtgttgcctctccactccatgattcccccacacgaacag cgcaaggtgtttgacaacccgccggccggtgtgcggaagattgttctgtcgacgaacatt gccgaaacgtccatcaccatcgatgacgtcgtgtatgtcatcaacacgggaaaggcaaag gagaagagctacgacgcgacgaaccagatctcggcgctgcaggcagagtggatcagtcgt gcgtcgtgccgtcaacgccggggccgcgccggccgcgtgcaggagggtgtgtgctaccac ctcttcacgtgctaccaccaccgcaacatgaaggagtatcaggttccagagatcctgcgc acctccctcgaagagctctgccttcaaatcaagatgctgcggctgggcctcgtgcgcccg ttcttggcgaaagcgctggatgcgccagacgacaagactgtcggccaggccctcacgctc ctacacaacctcgatgccctcgacagcaaggaaaacctcaccccactcggctaccatctg tcgcggctgccggtgaacccgcgcattggacggatgatcatttttgggagtctgtttgag tgccttgaccccgtgctcaccatcgctgcgtccctcagcttcaaggacccatttgtcatg ccaatcaacaggcaggcggaggtggaccgagtgaagaaggagtttgctggcgattccaaa agcgatcacattgcctttctccgtgctttccacggatgggagcaggcctggcgtgagcat cggcagcgggagtactgctgggacaacttcctctccggcagcacgctcaagatgatccgc gacatgaagacccagttcctcaacctcctccaggacatcggctttgtgggtcgcacgcgt gaggccatttccaagtgcaacatcaacagccggaatgagaagctggtcgtggctgtgctc tgcgcaggcctctaccccaacgtcgccagcgtataccactcgcatggcaaggcgtttggc aagcggccgccgaaactcaagacgcgggaggatggcactgttgccctccatccaaagtct gtcctcgctgacgagactgtcattccaaccaagtggctggtgtaccatcacaagatgaag acggtcaagatctacctctatgacgcgtccatgattccacctttcccccttatcttcttc ggtggcgacgtcaaagtcacacgggagggcgagaacgagctgatcgccgtcgacgacttt atcaagttccactccccggtcaacacggctcgactggtgcaaggattgaaggtgaagctg gaccaggtattgagcaggaagattgacgacccgcgcctcgacatccaggagaccatggga acactcatccccgtcatcgtggacctcatcacaaccgaggacgtgagcgagcgcgactat ctgcgccagcgccggcgcgcggaagacgagtactaccgcgcccgcgacaaatccaggccc tcatcctcatcctcctcctcctcgcgcggtggccgtggcggcagaggtggtggctacggt cgtggtcgtggtcgtggtggctacggtcgtggtcgtggtggtcgttatggcggtgcatcg tatcgtgatgacgatgatgacgaggacacggcccgcgccaaccttgaggaagatccatac tgggattag

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