Salpingoeca rosetta: PTSG_09461
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Entry
PTSG_09461 CDS
T04136
Name
(RefSeq) MSH2-Ex5 isoform
KO
K08735
DNA mismatch repair protein MSH2
Organism
sre
Salpingoeca rosetta
Pathway
sre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PTSG_09461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sre03400
]
PTSG_09461
DNA repair and recombination proteins [BR:
sre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PTSG_09461
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_27
MSP1_barrel
DUF4611
Motif
Other DBs
NCBI-GeneID:
16070267
NCBI-ProteinID:
XP_004989716
UniProt:
F2UMP4
LinkDB
All DBs
Position
Unknown
AA seq
904 aa
AA seq
DB search
MSADGDMQKQGFCRFFQSLPEKPATTIRFFDRNDYYTLHGDDALFMAKTVFKTMGVVKHW
GPQKLPSVNMSHMVFENTVKDLLLIKNYRVQVYSTKGNKSGKWELVKKASPGNTQMFEDI
LYAGGVNSSSIVMAVKLATEGQERVVGLAFCDVTANELRVCEFVDNDQFSNLEALVVQVG
ARECLITSDKSNPALAKVAQVVERCNVMVTQRKRSEFQHKDIEQDLGRLLKLEDDQTVST
LPQIDKKHAMDCVNAVIKYLELLSNDENFNRFFLLEFNFKQYMRLDAAAVRALSMFPTMG
DGGQKSQSLFGLLNRCKTAQGQRLLQQWLKQPLLDVAKIAERHNVVDILTHDDEMRTGLI
DVLRRFPDLNRLSKKFMRKKAQLQDCVQAYDAVLKIPKLTALLSEYHGEHAPLLKALFLD
DLADLAVDFAKYKELIEKTIDLAEVDNHQYLIKPSFNEDMQSARDRMDELQGQLPAVLSK
ASADLGLDAQKTVKLERDSKTNQFHFRVSRTHEKKLRGSRQYEILETLKNGVKFVNKRLK
TINEEYVGCYEQYLRIQEEVARKVVEVASGYATPMDDLNCVSAHLDVYVSFAVAGIEAPI
PYVKPTMTPMGEGDLVLRGCRHPCVEVQDDVNFIANDVRMNRKTAELQIITGPNMGGKST
YIRQIGIAVLLAQIGCFVPAQEASICVCDSVLARVGAGDSQLKGISTFMAEMLETASILK
SATANSLVIIDELGRGTSTYDGFGLAWAISEHVAKHIHCFCLFATHFHELTAMSSELPNV
TNLHVDAMTSNGALTLLYKIKPGVCDRSFGIHVAELADFPEQVVQMAKDKAAELEEFAQD
GNDDEEANDEGEGQETPTKRAKLSANEKERALLSFVKHAAQIDLERDPVAVLNDLRALRK
DVPA
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagatggcgacatgcagaagcaaggcttctgccgcttcttccagtccctgccg
gagaagccagcgaccacgattcgcttcttcgaccgcaacgattactacacgctgcatggg
gatgatgcgctgttcatggccaagacggtgttcaagacaatgggcgttgtcaagcactgg
ggcccacagaagctgccgtccgtgaacatgagccacatggtgtttgagaacacggtaaag
gacctcctcctcatcaagaactacagggtgcaggtctactccaccaaaggcaacaagagc
ggcaagtgggagctcgtcaagaaggcgtcgccgggcaacacacaaatgttcgaggacatc
ctgtacgctggcggcgtcaactcttcctccattgtcatggccgtcaaactcgccacagag
gggcaagagcgggttgtggggcttgccttttgcgatgtgacggcaaatgaactgcgtgtg
tgcgagtttgtggacaatgaccagttttccaacctcgaggcgttggtggtgcaagtcggc
gcgcgtgaatgcctcatcacctccgacaagtccaacccggcactggcaaaggtggcgcag
gttgtggagcgctgcaacgtcatggtcacacagcgcaagcggtccgagtttcagcacaag
gacattgaacaagaccttgggcgcctgctgaagttggaggacgaccagacagtgtccacg
cttccacagattgacaagaaacatgcgatggattgcgtcaatgccgtcatcaaatacctg
gagctgctcagcaacgacgaaaacttcaaccgcttcttcctcctcgaattcaacttcaaa
cagtacatgcgccttgacgccgcggcggtgcgtgcgctgagcatgttcccgaccatgggc
gatggcggccagaagtcgcagagcctgtttggactgctgaacaggtgcaagaccgcacag
ggccagcggctgctgcagcagtggctcaagcagccgctgcttgatgtggccaagattgcg
gagcggcacaacgttgtcgacattctcacccacgacgacgaaatgcgaacggggctgatt
gatgtgttgcggcgatttccagacctcaacaggctgtcaaagaaattcatgcgcaagaag
gcgcaactgcaggattgcgtgcaagcatacgacgccgtcctcaagatccccaagctgacg
gcgctgctgtctgaataccacggggagcacgcgccgctgctcaaggccctctttctcgac
gacctcgcagacctcgccgtggattttgccaagtacaaggagctgattgagaagacgatt
gacctggccgaggttgacaaccaccagtacctcatcaagccatccttcaacgaagacatg
cagtcggcgcgcgatcgtatggatgagctgcaaggccaactgccagccgtcctctcaaag
gcgtcagcggacttggggctggacgcccagaaaaccgtcaagctcgagcgcgactcgaag
acaaaccaattccacttccgcgtctccaggacacacgagaagaaactccgcggcagccgc
cagtacgaaatcctcgaaacgctcaagaacggcgtcaagtttgtcaacaagcgcctcaag
accatcaacgaagagtatgtcggctgctacgagcaatacctgcgcatccaggaagaagtt
gcgcgaaaagttgttgaggttgcgagcggatacgccacacccatggacgacctcaactgc
gtctcagcgcacctggacgtgtatgtgtcatttgcggtcgccggcattgaggcgccgatt
ccatacgtcaaaccaacaatgacgccaatgggggagggtgatcttgtgctgcgcgggtgc
cgccacccatgtgttgaagtgcaggatgacgtcaacttcatcgccaacgacgtgcgcatg
aacaggaaaacagcggaactgcagatcatcacagggccaaacatgggcggaaagtcaaca
tacatcagacagattggcattgcggtgctgctggcacagattggctgctttgttcccgcg
caggaagcgagcatttgcgtgtgcgacagcgtgcttgcgcgcgttggcgctggtgacagc
cagctcaagggcatctccacattcatggcggagatgctggaaacggcatccatcctcaag
tctgcaacagcaaactcgctggtgatcattgacgagcttggtcgcggcacctccacctac
gacggctttggcctcgcgtgggcaatctcagaacacgttgccaagcacatccactgcttt
tgcctctttgcgacgcacttccatgagctgacagccatgagcagcgagcttcccaacgtc
accaacctgcacgtcgacgccatgacctccaatggcgctcttaccctcctctacaagatc
aagccaggcgtgtgtgatcgcagctttggtattcacgttgcagagctcgcagacttccct
gagcaagtcgttcagatggcaaaggacaaggcggcggagttggaggagtttgcgcaggat
ggaaatgacgacgaagaagcaaatgatgagggcgagggccaggaaacgccaaccaagcgc
gcgaagctctccgccaacgagaaagagcgtgcgctgctgtcgtttgtgaagcacgctgcg
cagattgacctcgagcgcgaccccgtggccgtcctcaacgacctgcgcgctcttcgcaag
gacgtgcccgcctga
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