Salpingoeca rosetta: PTSG_09980
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Entry
PTSG_09980 CDS
T04136
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
sre
Salpingoeca rosetta
Pathway
sre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTSG_09980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sre03041
]
PTSG_09980
Spliceosome [BR:
sre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PTSG_09980
Complex C
U4/U6.U5 tri-SnRNP related factors
PTSG_09980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
SR-25
HIND
Motif
Other DBs
NCBI-GeneID:
16069885
NCBI-ProteinID:
XP_004989341
UniProt:
F2UNQ1
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MANRTVKDARSVHGTNPQFIVDKIIRSRIYETLYWKEQCFALTAETVIEKAVELTYVGGV
YGGNIRPTPFLCLTLKLLQLQPDKDIIIEYIKNEDFKYLRALGAFYLRLVGTSMDCYRYI
EPLLNDYRKLKRMSRNGVMELTHMDEFVDELLREDRVCDIGLPRIQKRYALEVNDELEPR
RSLLEDELDDFEGELQAAAAAGTGGGGEEDTTGSGGGDGGDAQKRKAEEDEEEGEEDEEE
GRTGGDGSGDESDRHHHRRRSPSRSPRRSRSRSHSRSRERGGRHRSRSSSRGRDRDRDRD
RDRDRDRDRDRDRDRDRDRDRDRDRDRSGRSDSRTRRRHRSRSRSHDHDDYDDRDRYSRR
YHRDRDRDRRSRRHDDDDYDDRRRHRRHRDSRDRSISPSDRTRTRRRSRSRSRSRDRGRR
YGRERYSRGERDGSRERESERRRSRSPSPSRRDGGDDERERRVVESERRTRDEETAPSSS
SSARKPAESSASSGGSGSHRLRFKGQKDSKKKKKKKRDKDSEAEGSKDTAKTPEDEIAEM
NALRAKLGMAPLK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccgcacagtgaaggacgcacggtctgtgcatggcacaaacccgcagtttatc
gttgacaagatcattcgcagccgcatctatgaaactttgtattggaaagagcagtgcttt
gctctcacagcggagacggtgatcgaaaaggcggtggaactgacatatgttggcggcgtg
tatggcggcaacattcgacccacgccgttcctctgcctcacactcaagctgctgcagctt
cagccagacaaagacatcatcatcgagtacatcaagaacgaggacttcaagtacctcagg
gcactgggcgcattctacctgcgactggtcggcacttcgatggattgctaccggtacatt
gagccgctgctgaacgattaccgcaagctcaaacgcatgagcagaaatggagtgatggag
ctgacgcacatggacgaattcgttgacgagcttcttcgagaggaccgcgtgtgtgatatt
ggcctccctcgtatccagaagcggtatgcgcttgaggtgaacgacgagcttgagccgcgg
cgctcgctgctcgaggacgaactcgacgactttgagggcgagctgcaggcagcagcagca
gcaggaacaggaggaggaggagaagaagacacaaccggtagtgggggtggtgatggtggt
gacgcgcagaagcgaaaggcagaggaggacgaggaagagggcgaagaggacgaggaagag
ggcaggaccggtggtgatggcagcggtgatgagagtgatcgtcatcatcatcgccgccga
tcaccatcgcgttccccgagacgcagccgcagccgcagccacagccgcagcagggagcgc
ggcggccggcatcgcagcagaagcagcagcagaggtcgtgatcgtgatcgtgatcgtgat
cgtgatcgtgatcgtgatcgtgatcgtgatcgtgatcgtgatcgtgatcgtgatcgtgat
cgtgatcgtgatcgtgatcggtctgggcgcagcgacagccggacgaggaggcgacaccgc
agccgcagccgaagtcatgatcatgacgactacgacgaccgtgatcgatacagccgccgc
taccatcgtgatcgtgaccgtgacaggcgctcacgccgccacgatgatgacgactacgat
gaccgccgccgtcaccgtcgccaccgtgactcgcgcgatcgcagcatttcgccgtcagat
cgcacacgcacacgcagacgcagcaggagcaggagcaggagccgggacagggggcgcagg
tacggtcgtgagcgctacagccgtggggagcgcgatgggagcagagaacgggagagtgaa
cgacgtcgatcacggtcgccgtcgccttcacggcgtgatggtggtgatgatgagagagag
aggagggttgtggagagtgagcgccgcactcgtgatgaagaaacagcaccgtcatcgtcg
tcatccgctcgcaaaccggctgagagcagcgcatcctccggtggctctggatcgcaccgc
ctgcggtttaaagggcagaaggactcaaagaagaagaaaaagaagaagcgtgacaaggac
agcgaggcggaaggcagcaaggacaccgcaaagacacccgaggacgaaattgcagagatg
aacgcactccgcgcaaaactgggcatggctcctctcaagtag
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