KEGG   Salpingoeca rosetta: PTSG_11032
Entry
PTSG_11032        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K12880  THO complex subunit 3
Organism
sre  Salpingoeca rosetta
Pathway
sre03013  Nucleocytoplasmic transport
sre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTSG_11032
  09122 Translation
   03013 Nucleocytoplasmic transport
    PTSG_11032
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_11032
   03041 Spliceosome [BR:sre03041]
    PTSG_11032
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     PTSG_11032
Spliceosome [BR:sre03041]
 Complex C
  Other components
   EJC/TREX
    PTSG_11032
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PTSG_11032
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR3_2nd Beta-prop_WDR19_1st EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_NUP159_NUP214 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR90_POC16_2nd WD40_Gbeta Beta-prop_EML Beta-prop_SCAP Tricorn_2nd Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_EIPR1 RMC1_N Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_Nup120_160 PQQ_2 Lactonase KNTC1_N
Other DBs
NCBI-GeneID: 16068483
NCBI-ProteinID: XP_004987956
UniProt: F2USH8
LinkDB
Position
Unknown
AA seq 228 aa
MMSSVRAGDGSRSDYAAILKRPSFSEFSHHKEAVLCLDWDCEGGMLGSGSMDKTACVMRL
TDRLTRELELRGHSGSVDFLTWHPNNKSVLATASSDHHVKFWDVRTGPKCTSTVPTKRPS
ICVRYAPDGNTLAVVNLEDTLMLIDAKTGKVTKSRQFNYEVNEFTWDKSGKHLFLTNRQG
RVEVYTFPELEPTDVAITAHTASCTCINFDPTHRDIRKADSVALLGAL
NT seq 687 nt   +upstreamnt  +downstreamnt
atgatgagcagcgttcgtgctggcgatggcagtcgcagtgactatgcggcgatcctgaaa
cggccctccttctcggagttcagccatcacaaagaagcggtgctgtgcttggactgggac
tgcgaaggaggaatgcttggatccggatccatggacaagactgcttgtgtgatgcgattg
acagaccgcctgacgagggaattggaattgcggggacatagcgggtcagtggacttcctc
acgtggcaccccaacaacaagtccgtactggcaacggcgtcaagtgaccaccacgtcaaa
ttttgggacgtacgcacgggtcccaaatgcacttcgaccgtcccaacaaagcggcccagc
atctgcgtccgctatgcacccgatggcaacacgctcgcagtcgtcaacttggaggatacg
ctcatgctgattgacgccaagacgggaaaagtgacgaagagcaggcagttcaactacgag
gtgaacgagttcacgtgggacaagagcggaaagcatctcttcctcaccaacagacaagga
cgcgttgaggtgtacacgttcccagagctggagccaactgacgttgccatcacggcgcac
accgcatcgtgcacatgcatcaactttgatccaacacacagggacattcgcaaagctgat
tccgttgcactcttgggcgcactgtag

DBGET integrated database retrieval system