Salpingoeca rosetta: PTSG_11099 Help Entry PTSG_11099        CDS       T04136                                  Name (RefSeq) uncharacterized protein   KO K24155   rabconnectin-3a Organism sre  Salpingoeca rosetta Pathway sre04142   Lysosome Brite KEGG Orthology (KO) [BR:sre00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     PTSG_11099  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sre04131]     PTSG_11099 Membrane trafficking [BR:sre04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     PTSG_11099  Endosome - Lysosome transport   Acidification regulators    Rabconnectin-3 complex     PTSG_11099    RAVE complex     PTSG_11099 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Rav1p_C WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR5 Beta-prop_EML_2 Beta-prop_WDR3_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd Beta-prop_LRRK2 TFIIA Motif Other DBs NCBI-GeneID:  16068545 NCBI-ProteinID:  XP_004988019 UniProt:  F2US50 LinkDB All DBs Position Unknown AA seq 2874 aa AA seqDB search MREEQLITGAPNSSPYVLADGYVGTFRFTAYACGSSIVFLSPDFAHIQSVRRPSNPNDIV CIDCSPLDGKLAVSHGNEVVVYKPHAAATDSSTPTELATLQWREHVVIQFDTHNVMSLSW DSRGGRLLTGGDHITLWCDMALVDDAYTAAECNADIVKGRLVPLWIKATATPVHHLHFSP DGTFFVSAGPHDRLPKLWYPRHKRRRARDSSSPPPTYPLFDFIYLPHPRAVTSLSWRAER PNARNALLTSCADNMCRIWTETSAYEELGFFCAYTIPPDFPESQANSVQLPFVLHWLNFR SFTNPAERAWTTTASAVSSELAPTATASVATAGTTNPTHHHDHDHDHAYGDDVTAGHGGG NDGGGNGMRATSDQASLRTGVEPDASRDIVGLNVTSRSRRGMNSSLGRSLSAQPSSTALN TLGRTRADTPSTQQGQHRGDVFAPQLPRKGRHKAPKTLAGRRILPRIRAYDAAPPELVFY VRADGSLAFWCVDGLDQSPRVHLVVKSLSRSPPVIPLSDAISPCYRVLVHFPDMHGASRE VMARRAEQFRRLATTIRAPTSSRTSAACGSGDGDDDDGEVDSFPIMLELHHSSGVLAKWQ VSFDPGSALSSVSTVECLARCAGHTADVGAVVAHPTLPCALSLATHHGRTQMVLWKANDM GVIPETARASGLLQLARLDVPSTSAPVKAAFVPSTHAVAWVVQTARGLELFALDCQATRS RMTAPKHQDKVVHRVVPCGVLVPLQSQDNTPSLPSSPSSSSSSSSSCTFAVSQLRSSDSG EASFLLAMTAPTTSANVGITISEQQQQQQQQQQQQQQQHVQLYCVSYHCSPVRTKRAVFP QHRLSMPGSILLVTPPTRVCVQRLMPGITDACAADTTHLLSLSRHDVLDLRLDAPWSAVY VGGITAANTFWTARIAHSPDMRTHSTGCSDGGDGGDGDEVPAFPDASVSVTMLPGLALSN TLPCNRGATAAAFSSLGRLAAPMPTPATDGTATTAATATNDGDDGNGGDGNGDGDVFGDA SLSFHVQDTFSVGVWEALSDHGRWRLESCLTFHSQVRHVAWCSTSRANDLLTVSTTDAVH VLSQTSSSVDGAWVEVARVPMTRTPTSIAMLPRGVLLTAYGTRITVHSSWSVADTDTDVA YVHVRGNASHTSAAAASTRTGHERSLLPCIFQRANEHNRTLPPHHPSVLQHMLCLPSGED AAGAVLSKVAAALATLKTSAEEAMSYIYDDTATRRFHETRKKEGLPCVDVGAIPLPELAR LLGVSSDGSGSNTASTTANGSSSSSTTTNSTAATTAAAGLFGAGAAQTKADKSLLFSSAT ADGSTALGDVDAATLLTSPAQLAALTKSLSRVRLAGLTDEETYALRGLLSAAQELNARRT SLDACGLRFVVSLSLFRAQCELAAGKSSNAAHGTSSYFGSRGTSTGGDKGSGDGTNGNTT TTTTTMHAKDFVWALHSEAQDVLLEVVAPAVPPGGGGGGDGQGALTWAALRAVGFGWWVT SITLLKKTIERVMKGAYKRDSTSLLDVALFYVALGKTTLLAGLFKVAGDDRMNGFFRHDF KQERWRTAALKNAYALLSKQRFLHAAAFFLLGGDLDGALNVLVKSLRDPQLALTICRLCE DSRVGIATPGSKSDNNNSSSNTTTTINGGDGGQGGDGEDTMTPLQKLLRERLLPMFEAAG DMFGRHIALWHLRDYTGAVDVLLNHRPEPALSLDDDAAAGASSKASTSHSRLASTSSVRT TASEGRGGYSSGSNSRSAAGQGDTTTNHSLTYPAAVTAYTLARQLMEHSQVRGKRTLRAH MFLSAAYAYAQTGQPLFALTVLQEMDAHLQTITPASASGGGGDGDGGDGGGAGATVAEPA QPKMDMQDMINSGTFDFGAFSFGDDDDDFGGGFGDPGMATATESSTEADTGTARDADGGA TASGGADGVSEDVRAVEGDVFEATLLWRVELGSAIISSGLASWLDATSDSNSNSNDDGDG NHGHGGAAGDQHDASSVVETGEASTADSTNSSEGDGHCNVTWQMSGALLRKTVEVLQCLG LSAASTTTAAAEATSTTSTTATTAAEAATGSVTDANAAAAAADRALARAFEFAVLQRSVL GTFTTYNLVECMHCLVGLEPALVPRLLDHMSQQLFHFLTQRLTEGTGGLEPIHMRSCRVL ADGVARGMWQIAASERPPACFVTPEQLVEWVVSVYGVLVMLAWDERNLSLLVPAVQHALP TALYRAIFGVDIDSAAQAASVLSKPPPVLPATAHTLAEYTLHPVNEEQFRTLDGLSDLDQ VEVGRAERDTVAMDASWRYRWRLVELLLYGLMEVTVFEHVSSAGIDVQELGRASSNVFAV LRGIAQQRQQLCADLHTSPVPSEFAELLIRPPGAHPASSVFRVRQLLQDTSNPFSGLDAR RLWSVLLAHPPLLQYVEHLVRGNMELQQAAAVAAVATADAAATASSSSSAAAAVTKAGGE SDTAGGSDDAAAAITKAAAAATTSEDGGIAWETLCHFPSDVACLRVMRTGTMLVATSKDT YEFSSIQDLYPEMAAGAGGGGATRNQHHHHHHHHHQHGGVTHAPCCSGPLRTVPAPLLSS ISPDASPTSLASPHTPLTSATVTQLETPSGPLPVEPRPWRAKLIAPHPKFKAYVVQGDSP HELLALKVGDDYVLGRYIVPKDIRVAFIGFDPLGSRLFAASSEGFVCFWHFRPAVKKDHF RRVYVSSHKIDAIAMAAPSVFAYSSDTRLQVLDMLLLSSRPVVYETKSPDDGSIKALHHS LEQHTLFCATSRGSVFLVDLDVYQRIKTINLFDSSVRALAPLVGTFMLAVASDLTIKVFD VSERHASKTVAKLPSRAKVFSTPAISITSVPGRVFVANNDALLTCTTAQVLGLL NT seq 8625 nt NT seq  +upstreamnt  +downstreamnt atgcgggaagaacagctcatcaccggagctccaaacagctccccatatgttctggcagac ggctacgttggcaccttcagattcacggcgtatgcttgcggatcatcgatcgtgttcctg tcgccggatttcgcgcacatccagtctgtgcgacgaccaagcaacccaaacgacattgtg tgcatcgactgctccccactcgacggcaaattggcggtgtcgcacggaaacgaggttgtt gtgtacaaaccacacgcagccgcaacagacagctccacgcctaccgagctcgcgacgctg caatggcgggagcacgtggtcatccagtttgacacgcacaatgtgatgagcctgtcgtgg gattcgcgcggcgggcgcctgctcaccggcggcgaccacatcacgctgtggtgcgacatg gcgctggtggatgatgcgtacacggcggcggagtgcaatgcagacatcgtcaagggtcgc ctcgttccgctctggatcaaagcaacagccacaccagtgcaccacctgcacttctcccca gatgggacgttcttcgtctctgcgggcccacacgaccgcctgccaaagctgtggtatccg cgacacaagcggcggcgcgcgcgtgacagcagcagcccgccaccaacatatccgctgttt gacttcatctacctgccgcacccacgcgccgtcacctccctctcatggcgagcagagcgc ccaaacgcaaggaatgcgttgctgacgtcgtgtgcggacaacatgtgtcgcatttggacg gagacctccgcctacgaagagctcggcttcttctgcgcatacacgattccacctgacttt ccggagtcgcaagcaaactccgtgcagcttccgtttgtcctccactggctcaacttcagg agcttcaccaacccggccgagcgcgcgtggacaacaacagccagcgccgtgtcgtcggaa cttgcgccaacagcaacagcatccgtcgccacagccggcaccaccaaccccacgcaccac cacgaccacgaccacgaccacgcctacggcgacgacgttaccgctggtcatggtggtggc aatgatggtggtggcaatggtatgcgtgcgacctctgatcaggcgtcactgcggacgggg gttgagcctgatgcgtcacgcgatatcgtcggcctcaacgtcacatcacgcagcaggcgc ggcatgaacagcagtcttggtcgcagcctgtctgcacagccgagcagcaccgccctcaac accctgggacgcacacgcgcggacaccccatccacgcagcaggggcagcacaggggcgat gtgtttgcgccccagttgccgcggaaagggcgccacaaagcgcccaagaccctcgctggc cgccgcatcctccctcgcattcgcgcatacgacgcagcgccgcccgagcttgtgttctac gtgcgcgctgacggctcgctcgccttctggtgcgtggacggcctcgatcaaagcccaagg gtgcacctggttgtcaagtcgctgtcccggagcccgcccgtgattccgctgtcggacgcc atctccccctgctaccgcgtcctcgtccacttccccgacatgcatggcgcatcgcgtgag gttatggcaaggcgtgccgagcagttccggcgcctggccaccaccattcgcgcgccgacg tcctcccgcaccagtgctgcgtgtggcagcggtgacggcgatgacgacgatggcgaggtt gactcgttccccatcatgcttgagctgcaccactcctctggtgtgctggccaagtggcag gtgtcgtttgaccccgggtcggcgctctcgtccgtgtccacggtggagtgtcttgcgagg tgcgcgggccacactgctgacgtcggtgccgttgttgcccacccgacactgccctgtgct ctctccctagccacgcaccacggccgcacacagatggttctctggaaggccaacgacatg ggcgtgataccagagaccgctcgggcgagcggcttgctgcagctggcacgactcgatgtc cccagcaccagcgcgcctgtcaaggccgcgttcgtcccatcaacacacgccgtggcgtgg gtggtgcagacggcacgcgggctggagctgtttgccctcgactgccaggccacgcgcagc aggatgacagcgccgaaacaccaggacaaagtcgtgcatcgtgtcgtgccctgtggtgtg cttgtgccactgcagtcgcaggacaacacgccatcgttgccatcgtcaccatcatcatca tcctcatcctcatcatcgtgtacgtttgccgtgtctcaactccgctcgagcgacagcggt gaggcgtctttcctcctcgccatgacagctccaaccacttctgccaatgtcggcatcacc atctcagagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcatgta cagctgtactgcgtgtcatatcactgctcgcccgtgcggaccaagcgggccgtgtttccg cagcaccgcctgtccatgcccggcagcatcctgctcgtcacgccaccgacgcgcgtgtgt gtacagcggctcatgccgggtatcacggacgcgtgtgccgctgatacgacccacctgctc tcgctctcacgccacgacgtgcttgaccttcgactcgatgcgccgtggtcagccgtgtac gttggcggcatcacagcagcaaacaccttctggacagcgcgcattgcacacagcccagac atgcgcacgcacagcactggttgtagcgatggtggcgatggtggcgatggtgacgaggtg cctgcgttccctgacgccagcgtgagtgtcaccatgttgcctggattggcgctgagcaac acgctgccgtgcaatcgcggcgccaccgccgcggccttcagctcgcttgggcggcttgct gctcccatgccaacgccagcaaccgatggcacagccaccacagcagccaccgccacgaat gatggtgacgatggcaacggtggcgatggcaatggcgatggggatgtgtttggcgacgcg tcgttgtcgttccatgtgcaggacaccttctctgttggcgtgtgggaggccctgagcgac cacggccgctggcggctcgagtcgtgcctcaccttccacagccaagtgcggcacgtggcg tggtgctccacctcccgcgccaacgacctgctcaccgtgtccacaaccgacgccgtgcac gtgctgtcccagacgagcagcagcgtggatggcgcgtgggtggaggtggcacgcgtgccc atgaccaggacacccacctccattgcaatgctcccccgcggcgtgctgctcacggcatat ggcacgcgcatcaccgttcactccagctggtccgttgcagacacggacacggacgtggca tacgtgcacgtcagagggaacgcatcacacacatccgcagcagcagccagtacacgcact ggccacgaacgctccctccttccctgcatcttccagcgggccaacgagcacaaccgcacc ctgccgccccaccacccaagcgtgctgcagcacatgctgtgtcttcccagcggtgaggat gcagcaggtgctgtgctgtcaaaggtggcggctgcactcgccacgctcaagacgtccgct gaagaggccatgtcctacatctatgacgataccgccacacgccgcttccacgagacgcga aagaaggaaggtctgccgtgcgtggatgtgggcgccatccccctgccagagctcgcacgc ttgctcggtgtgtccagcgatggctcgggaagcaacaccgccagcacaaccgcaaacggc agcagcagcagcagcacgacaacgaacagcacggcggccacgacagctgctgcggggctg tttggcgcgggagcggcccagaccaaggcagacaagtcgcttctgttctcctctgcaaca gcggacggcagcacggcgctaggcgatgtggacgctgcgacgctgctgaccagtccagcc cagctggccgccctgacgaaatcgctctcacgcgtgcgcctggccgggctgactgacgag gagacgtacgcactgcgtggcctgctgtctgcggcgcaggaactgaatgcacgacgcacc tcgctcgacgcgtgcgggcttcggtttgtcgtcagcctgtccctgttccgtgcacagtgc gagctggctgctggcaagtcgtccaacgcagcacatggcacttcctcctactttggcagc cgagggaccagtacaggtggcgacaagggaagcggcgacggcaccaacggcaacaccacc accaccaccaccacgatgcacgccaaagatttcgtgtgggcgctgcattctgaagcgcaa gacgtgctgctcgaggtcgtggcaccagcagtcccaccaggcggtggcggtggtggcgat ggccagggtgcgctgacttgggctgccctgcgcgctgttggctttggctggtgggtgacc tccatcacgctgttgaagaagacaatcgagcgggtgatgaagggcgcgtacaagcgcgac tcaacgagtctgctggacgtggcgctgttctacgttgccctgggcaagacaacgctgctt gccgggctgttcaaagttgccggcgatgatcgcatgaacgggtttttccggcacgacttt aagcaggagaggtggcgcacggctgcgctgaagaacgcctatgcgctgctgagcaaacag cggttcctgcatgctgccgccttcttcctgcttggtggggatctggacggcgcgctgaac gtgctggtgaagagtcttcgtgatccccagcttgccctcaccatctgccgcctgtgcgag gacagccgtgtcggcattgcaaccccaggcagcaaaagtgacaacaacaacagcagcagc aacactaccaccaccatcaatggtggtgatggtggccagggtggcgacggcgaagacacg atgacgcctttgcagaagctgctgcgagagcgcctgctgcccatgtttgaggcagcgggc gacatgtttggccggcacattgcactgtggcacctgcgcgactacacgggcgctgtggac gtgctgctgaaccaccgacccgagcctgcgctgtcgcttgatgacgatgctgctgccggt gcgagcagcaaggcatcgacatcgcattcgcgactggcgagcacaagcagcgtgcgcaca acagcgagcgaagggaggggcggctacagcagcggcagcaacagcaggagcgcagcgggc cagggagacaccaccaccaaccactcgctcacgtaccctgccgctgtcaccgcatacacg ctggcgcgacagctgatggagcactcgcaagtgcgagggaagcgcacgctgcgcgcacac atgttcctgagtgccgcgtatgcatacgcgcagacggggcagccgctgtttgccctaacg gtgctgcaggaaatggacgcacaccttcagaccatcacaccagcatcagcgagtggtggt ggcggcgatggtgatggtggtgacggtggcggtgctggggccactgttgctgaacctgcg cagcccaagatggacatgcaagacatgatcaactctggcacgtttgatttcggcgcgttt tcctttggagacgacgacgatgactttggtggcgggtttggcgatccagggatggcaacg gcaacggagagcagcactgaggcagacacggggacggccagagacgcagatggtggtgcc acggcgtccggtggtgctgacggtgtgagtgaggatgtgcgggctgttgaaggcgatgtg tttgaggcgacgctgctgtggcgcgtggagctgggcagcgccatcatcagcagcgggctg gcgagctggctcgatgccaccagcgacagcaacagcaacagcaacgatgacggtgacggt aaccatggccatggaggtgcagctggcgatcaacacgacgcaagcagcgttgttgagaca ggagaggcaagcactgccgacagcaccaacagcagcgagggcgatggtcattgtaacgtg acgtggcagatgtcgggcgctctcctgcgcaaaaccgttgaggtcttgcaatgtcttggg ctctcagcagcgtcaacaacaacagcagcagcagaagcaacgtcaacaacgtcaacaaca gcaacaacagcagcagaagcagcaacgggatcggttacagatgcaaacgctgccgctgct gccgcggacagggcgttggcgcgtgcgtttgagtttgctgtgctacagcggtctgtactg ggcacattcaccacatacaacctggtggagtgcatgcactgcctcgttggccttgagcct gcactggtgcctcgcctgctggaccacatgtcacagcagctgttccacttcctcacgcag cgcctcacggaaggcaccggtgggctggagcccatacacatgcgctcgtgccgcgtgctg gccgacggtgttgcgcgcggcatgtggcagattgctgcgagcgagcgcccgcccgcgtgc tttgtcacgccagagcagctggtggagtgggtggtgagtgtgtacggtgtgctggtgatg ctggcgtgggacgagcgaaacctgtcgttgcttgtacctgcagtgcagcacgcgctgcca acggccctgtaccgtgccatctttggtgtcgacattgacagcgcggcgcaggcggcatcc gtgctgagcaaacccccgcccgtgctgccggcgaccgcgcacacgcttgcggaatacacg ctgcacccggtcaacgaggagcaattccgcacgctggacggcctgagcgatctggatcag gtggaggtggggcgggcagagcgcgacacggtggccatggacgcgtcgtggcgataccgc tggcggctggtggagctgctgctgtacggcctgatggaggtgacggtgtttgagcacgtg tcctccgccggcattgatgtgcaggagcttgggcgcgcctcaagcaacgtgtttgccgtg ctgcgtggcattgcgcaacagcggcagcagctgtgcgccgacctgcacacttcgcccgtg cccagcgagtttgcagagctgctgattcgcccgcccggtgcgcacccggcaagcagcgtg ttccgcgtgcggcagctgctgcaagacacgtcaaacccgtttagcggcctggatgcgcgg cggctgtggtcggtgctgctggcgcacccgcccttgctgcagtacgtcgagcacctcgtg cgcgggaacatggagctgcagcaggcagcggcagtggcagcagtggcgacagcggacgca gctgccactgcgtcatcgtcgtcttcagcagctgctgcagtaacgaaggctggcggtgag agtgacacagcaggcggcagtgatgatgctgctgctgcgataaccaaagcagcggcggcg gcgacaacaagcgaagatggcggcattgcgtgggagacgctgtgccacttccccagcgac gtggcctgtctgcgtgtgatgcgcacgggcacgatgcttgtggccaccagcaaggacacg tatgagttttccagcatccaagacctctatcccgagatggctgccggcgctggcggtggc ggtgcgacccgcaatcaacaccatcaccaccaccatcaccaccatcagcacggcggtgtg acgcatgcgccctgctgtagcggtcccctgcgtaccgtgccagcgccgctgctgtccagc atcagcccggacgcgtcgccaacgtcgctcgcgtccccgcacaccccgctcacctccgcc actgtcacgcaactggagacgcctagcggcccgctacctgttgagccgcggccgtggcgg gcaaagctcatcgcgccacaccccaagttcaaggcgtatgttgtgcagggcgactcgccg cacgagctgctggcactgaaggttggcgatgattacgtgcttgggcggtacattgttccc aaggacattcgcgtggcgtttattggctttgatccgctgggctcgcggctgtttgctgca tccagcgaggggtttgtgtgcttctggcactttcgtccagccgtgaagaaggaccacttt cgccgcgtgtatgtgtcctcgcacaagattgacgcaatcgcaatggcggcaccgtcggtg tttgcgtacagcagcgacacgcggctgcaggtgcttgacatgctgctgctctcgtccagg cccgtcgtgtacgagacgaagtcgcccgatgacggcagcatcaaggccctccaccacagc ctcgagcagcacacgctgttctgcgctacgagccgtgggtccgtgttcctggtggacctg gatgtgtatcagcgcatcaagaccatcaacctcttcgacagcagcgtgcgtgcgctcgcc ccgctcgtgggcacgttcatgctcgctgtggcctcagacctgaccatcaaggtgtttgat gtctcggagcgccacgcgtccaagaccgtggccaagcttccgtcgcgggcaaaggtgttt tccacgccagccatcagcatcaccagcgtgcctggtcgcgtctttgtcgccaacaacgac gcccttctcacgtgcaccacagcgcaggtgctggggctgctgtag

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