KEGG   Salpingoeca rosetta: PTSG_11198
Entry
PTSG_11198        CDS       T04136                                 
Name
(RefSeq) WD repeats and SOF1 domain-containing protein
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
sre  Salpingoeca rosetta
Brite
KEGG Orthology (KO) [BR:sre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sre03009]
    PTSG_11198
   04121 Ubiquitin system [BR:sre04121]
    PTSG_11198
Ribosome biogenesis [BR:sre03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    PTSG_11198
Ubiquitin system [BR:sre04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     PTSG_11198
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_EML_2 WD40 Sof1 WD40_CDC20-Fz WDR55 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_EML Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_WDR19_1st WD40_RFWD3 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th eIF2A Beta-prop_IFT140_1st Tipalpha KNTC1_N Ge1_WD40 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 16068365
NCBI-ProteinID: XP_004987843
UniProt: F2USP9
LinkDB
Position
Unknown
AA seq 511 aa
MKVKVLRRDEDQVVRQSKHDLPRMQRNTAPELHPFEAAREYKRALNSVKLERVFAKPFIC
SLDGHRDGVYCMASHPKKLSQMLSGSADGEVRLWDLSSRTCLFNRELHKGFVHGVCFTPL
GEHFLSVGQDKTIKICTLGEEVEQTTLLGKSFFKDISYHRSKDVFVTGGPEVELWSPHRA
DPIQTLTWGHDTTNCTVFNMVETNIFASTADDRSITLFDIRASKPIRKIKLEMRSNRLCW
NPQEAFNFTVANEDHNCYTFDMRKMKRALMAHQDHVSAVMDISYSPTGREFATASYDCSL
RIFDHRSGHSREVYHTKRMQRVFCVKWANDNKYITSGSDETNIRVWKATAWEKIGTQSAR
QRAASRYGEKLKERFKHHPEIRRISRHRHVPKAIYNARRQKHEMIQAQRRREQNLAHTRC
DDEQERTAGQGREEEEGEEGEEGTWSHPICPRGRIHRGVTMRTGVALHIPRHTHTHMHTI
TQAHTHTHILAHASFACIFSCCSLFSGYVHI
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgaaggtcaaggtgttgaggcgcgacgaagatcaagtcgtgcgacagagcaagcacgac
ttgccgcgcatgcagcgcaacacagccccagagctgcaccctttcgaagctgctcgcgag
tacaagcgcgccctgaactccgtcaaactggagcgtgtgttcgccaaacctttcatctgc
tctctcgatggccaccgcgatggcgtgtactgtatggcatcacatcccaagaagctcagc
cagatgctgtcgggctcggcggacggtgaagtgcgcctgtgggatctctcgtcgcgcacg
tgcctcttcaaccgtgaactgcacaaagggtttgtgcacggcgtgtgcttcacaccattg
ggcgagcactttctctccgtcggtcaggacaagactatcaagatctgcactctgggggag
gaggttgagcagacaacactcttgggcaagtcgtttttcaaggacatttcatatcacaga
tcaaaggatgtgtttgtgacgggcggccctgaggttgagctgtggagtccccatcgtgcc
gacccgatacagaccctcacatggggacacgacaccacaaattgcaccgtcttcaacatg
gtcgagacaaacatcttcgcgtcgacggctgacgaccgctccatcaccctctttgatatt
cgcgcatcaaaacccatcaggaagatcaagcttgagatgcggtcgaacaggctgtgctgg
aatccgcaggaggcgttcaacttcaccgtggccaacgaggaccacaactgctacacgttt
gacatgcgcaagatgaagcgcgcgctgatggcgcaccaggaccacgtgtctgctgtaatg
gacatctcttattcgccgacggggcgcgagtttgccacggcctcgtacgactgctctctc
cgcatcttcgaccaccgcagcggccactccagggaggtgtatcacacgaagcgcatgcag
cgcgtgttctgcgtcaagtgggcgaacgacaacaagtacatcacatcgggcagcgatgag
acgaacattcgcgtgtggaaggcaacggcctgggagaagattggaacccagagcgcacga
caacgcgcagccagccggtatggggagaagttgaaggagcggttcaagcatcatcccgag
attcgtcgcatttcgcgccaccgccacgtcccaaaggcgatttacaacgcccgcagacag
aaacacgagatgatccaggcgcagcgccgccgcgagcaaaacttggcgcacacacgctgc
gatgatgagcaagaacgcaccgcagggcaaggccgggaagaagaagaaggagaagaaggg
gaagaaggaacgtggtctcatccgatctgcccgcgaggtcgaatccatcgaggagtgacg
atgcgcactggcgtcgcgttgcatattcccaggcacacacacacacacatgcacaccatc
acacaggcacacacacacacacacatacttgcacatgcttcctttgcttgcatcttctct
tgttgttcgttgtttagtggttatgtacacatatga

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