Salpingoeca rosetta: PTSG_11931
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Entry
PTSG_11931 CDS
T04136
Name
(RefSeq) histone-binding protein RBBP4
KO
K10752
histone-binding protein RBBP4
Organism
sre
Salpingoeca rosetta
Pathway
sre03082
ATP-dependent chromatin remodeling
sre03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PTSG_11931
03083 Polycomb repressive complex
PTSG_11931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sre03036
]
PTSG_11931
Chromosome and associated proteins [BR:
sre03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
PTSG_11931
Histone modification proteins
HAT complexes
HATB complex
PTSG_11931
HDAC complexes
Sin3A-HDAC complex
PTSG_11931
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
PTSG_11931
PRC2.2
PTSG_11931
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
PTSG_11931
Heterochromatin formation proteins
Other heterochromatin formation proteins
PTSG_11931
Chromatin remodeling factors
NuRD complex
PTSG_11931
NuRF complex
PTSG_11931
NuRF complex (fruit fly)
PTSG_11931
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD_LRWD1
eIF2A
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_RIG_1st
MIOS_WD40
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SCAP
Beta-prop_DCAF12
VPS11_N
Motif
Other DBs
NCBI-GeneID:
16076944
NCBI-ProteinID:
XP_004996358
UniProt:
F2U3I1
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MSSAKQGGDDPLQLDPAEQRLINEEYKIWKKNTPFLYDMVMTHALEWPSLTAQWLPDVTR
PEGKDYSTHRIILGTHTSGDEPNYLIVANVQLPNSDATIDARKYDDEKGEYGGFGSVAGK
VEVKVRMNHPGEVHRARYMPQNPHIIATKTPQPDVLIYDITKHPSQPKAGDEEVNCQLRL
RGHTKEGYGLSWNLHKDGHLLSAADDMLVCLWDINQGTTGDNVLDATTKFSGHSAIVEDV
QWHALHDSLFGSVGDDCFLNIWDTRVGDSTRPRHSIKAHDREVNCLSFNPFCEYILATGS
ADETVALWDMRNLKVKLFSLESHTNEIFQVQWSPHYETILASSGTDRRVHVWDLSKIGDD
QSAEDAEDGPPELLFVHGGHTSKISDFSWNPNDPWVVASVAEDNIMQIWQMAENIYNDQE
VDIPAASLP
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagctcagccaaacaaggaggcgatgacccgctgcagctggaccctgcagagcagagg
ctcatcaacgaggaatacaagatctggaagaagaacacaccattcctgtatgacatggtc
atgacacacgccctcgagtggccttcgctgactgcacaatggcttcccgacgtgaccagg
ccggaaggcaaggactacagcacccaccgcatcatcctcggcacccacacgtctggtgac
gagccaaactacctgattgtggccaatgtgcaactgccaaactcggacgcaaccattgac
gcacgcaaatacgacgacgagaaaggagagtatggcggctttggttcggtggccggcaag
gtggaggtcaaggtccgcatgaaccacccaggagaagtgcacagggcgcggtatatgccg
cagaacccgcacatcatcgccacgaagacgccgcagccggatgtgctcatctacgacatc
accaagcacccgtcccagccaaaggccggcgacgaagaggtcaactgccaactgcgcctg
cgcggccacacaaaggaaggctacggcctctcgtggaacctgcacaaggacggccacctc
ctctccgcagccgacgacatgctcgtgtgtctgtgggacatcaaccaaggcacaactggc
gacaacgtcctcgacgcaacgacaaaattctcaggacactccgccatcgttgaggacgtg
caatggcacgcgctgcacgattccctctttggctccgtcggcgacgactgcttcctcaac
atctgggacacgcgtgttggtgacagcacgcggccgcgccacagcatcaaggcccacgat
cgtgaggtcaactgcctctcctttaaccccttttgcgaatacatcctggcgacaggttca
gccgacgagacggtggcgctgtgggacatgcgcaacctcaaggtgaaactcttctcgctc
gagtcccacaccaacgaaatcttccaggtacaatggtcgccgcactacgagacgattctt
gcgtcgagcggcacggacaggcgcgttcacgtctgggacctcagcaaaatcggggacgac
cagtctgcggaagacgccgaggacggcccgccagaactgctgtttgtgcacggcggccac
acgtcgaagatttccgatttctcctggaaccccaatgacccatgggtggtggccagtgtc
gctgaggacaacattatgcagatttggcagatggccgagaacatttacaacgaccaggag
gtggatatccctgccgccagcctcccgtga
DBGET
integrated database retrieval system