KEGG   Salpingoeca rosetta: PTSG_11931
Entry
PTSG_11931        CDS       T04136                                 
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
sre  Salpingoeca rosetta
Pathway
sre03082  ATP-dependent chromatin remodeling
sre03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    PTSG_11931
   03083 Polycomb repressive complex
    PTSG_11931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sre03036]
    PTSG_11931
Chromosome and associated proteins [BR:sre03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     PTSG_11931
  Histone modification proteins
   HAT complexes
    HATB complex
     PTSG_11931
   HDAC complexes
    Sin3A-HDAC complex
     PTSG_11931
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     PTSG_11931
    PRC2.2
     PTSG_11931
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     PTSG_11931
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    PTSG_11931
  Chromatin remodeling factors
   NuRD complex
    PTSG_11931
   NuRF complex
    PTSG_11931
   NuRF complex (fruit fly)
    PTSG_11931
SSDB
Motif
Pfam: CAF1C_H4-bd WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD_LRWD1 eIF2A ANAPC4_WD40 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_RIG_1st MIOS_WD40 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_SCAP Beta-prop_DCAF12 VPS11_N
Other DBs
NCBI-GeneID: 16076944
NCBI-ProteinID: XP_004996358
UniProt: F2U3I1
LinkDB
Position
Unknown
AA seq 429 aa
MSSAKQGGDDPLQLDPAEQRLINEEYKIWKKNTPFLYDMVMTHALEWPSLTAQWLPDVTR
PEGKDYSTHRIILGTHTSGDEPNYLIVANVQLPNSDATIDARKYDDEKGEYGGFGSVAGK
VEVKVRMNHPGEVHRARYMPQNPHIIATKTPQPDVLIYDITKHPSQPKAGDEEVNCQLRL
RGHTKEGYGLSWNLHKDGHLLSAADDMLVCLWDINQGTTGDNVLDATTKFSGHSAIVEDV
QWHALHDSLFGSVGDDCFLNIWDTRVGDSTRPRHSIKAHDREVNCLSFNPFCEYILATGS
ADETVALWDMRNLKVKLFSLESHTNEIFQVQWSPHYETILASSGTDRRVHVWDLSKIGDD
QSAEDAEDGPPELLFVHGGHTSKISDFSWNPNDPWVVASVAEDNIMQIWQMAENIYNDQE
VDIPAASLP
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgagctcagccaaacaaggaggcgatgacccgctgcagctggaccctgcagagcagagg
ctcatcaacgaggaatacaagatctggaagaagaacacaccattcctgtatgacatggtc
atgacacacgccctcgagtggccttcgctgactgcacaatggcttcccgacgtgaccagg
ccggaaggcaaggactacagcacccaccgcatcatcctcggcacccacacgtctggtgac
gagccaaactacctgattgtggccaatgtgcaactgccaaactcggacgcaaccattgac
gcacgcaaatacgacgacgagaaaggagagtatggcggctttggttcggtggccggcaag
gtggaggtcaaggtccgcatgaaccacccaggagaagtgcacagggcgcggtatatgccg
cagaacccgcacatcatcgccacgaagacgccgcagccggatgtgctcatctacgacatc
accaagcacccgtcccagccaaaggccggcgacgaagaggtcaactgccaactgcgcctg
cgcggccacacaaaggaaggctacggcctctcgtggaacctgcacaaggacggccacctc
ctctccgcagccgacgacatgctcgtgtgtctgtgggacatcaaccaaggcacaactggc
gacaacgtcctcgacgcaacgacaaaattctcaggacactccgccatcgttgaggacgtg
caatggcacgcgctgcacgattccctctttggctccgtcggcgacgactgcttcctcaac
atctgggacacgcgtgttggtgacagcacgcggccgcgccacagcatcaaggcccacgat
cgtgaggtcaactgcctctcctttaaccccttttgcgaatacatcctggcgacaggttca
gccgacgagacggtggcgctgtgggacatgcgcaacctcaaggtgaaactcttctcgctc
gagtcccacaccaacgaaatcttccaggtacaatggtcgccgcactacgagacgattctt
gcgtcgagcggcacggacaggcgcgttcacgtctgggacctcagcaaaatcggggacgac
cagtctgcggaagacgccgaggacggcccgccagaactgctgtttgtgcacggcggccac
acgtcgaagatttccgatttctcctggaaccccaatgacccatgggtggtggccagtgtc
gctgaggacaacattatgcagatttggcagatggccgagaacatttacaacgaccaggag
gtggatatccctgccgccagcctcccgtga

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