Salpingoeca rosetta: PTSG_11997
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Entry
PTSG_11997 CDS
T04136
Name
(RefSeq) mRNA 3'-end-processing protein yth1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sre
Salpingoeca rosetta
Pathway
sre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PTSG_11997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sre03021
]
PTSG_11997
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_11997
Transcription machinery [BR:
sre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PTSG_11997
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PTSG_11997
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
16076490
NCBI-ProteinID:
XP_004995904
UniProt:
F2U4V2
LinkDB
All DBs
Position
Unknown
AA seq
398 aa
AA seq
DB search
MEDSLSDLSGHEFELAKRLDAQDAAYLVPFEGMDNSGEEICKAFLQGTCTRGSLCPFRHT
KPTRNVVCKHWINGLCRKGDNCDFLHIYDLSKMPECHFFRNDGHCEKGKDCLFLHITPEQ
RRRDCAWYWRGFCKNGANCRLRHRKAVLCPNYLVGFCPKGPDCQHMHPRWELPTSNAINP
KTGKPDDKIEGMRRGPRQQQSDQPQSQQLPPGFNTMRQQQQQQQQQQQQQQMQPTPPMPP
PFFMQQQQQQRPPRPPPPQQQLLQQQQMQQQRPQAFAPNMRPPFPPTSGAPPQQQMPPRP
PMPPPQLRPPQQQQQQQPWRPPPMSQHGFPPSSQQQPARPGLMAPPPRPGFFPQRMPMSQ
GPRMMPPFSMGPPPHFQQQQQQHQQQFPRPPMPPPGRR
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagcttgtcagatttgagcggccacgagtttgagctggccaaacggctggat
gctcaggatgcggcgtacttggtgccgttcgagggcatggacaactcgggtgaggagatt
tgcaaggcgtttctgcaaggcacgtgtacgcgaggcagtctgtgtccgtttcgccacaca
aagcccacccgcaacgtagtttgcaagcattggatcaacggcctgtgccgcaagggtgac
aactgcgactttttgcacatctacgacctctccaagatgcccgaatgccactttttccga
aacgacgggcactgcgagaagggcaaggattgtctgttcctacacattacaccagagcag
cgtcgtcgtgactgcgcttggtactggcgcggcttctgcaaaaacggcgccaactgtcga
ttgcggcaccgcaaggcggttctctgcccaaactacctcgtcgggttctgcccaaagggg
ccagactgccaacacatgcacccgcgctgggagcttccgacctcgaacgccatcaatccc
aagacagggaaaccagacgacaaaatagaaggtatgaggcgcggcccacgacagcagcag
tcggatcagccacagtcacaacagctacctccaggctttaataccatgcgtcagcagcaa
caacagcagcaacaacaacagcagcagcagcaaatgcagccgacaccgcccatgccacct
ccattcttcatgcagcaacaacagcagcaacgacctccacggccaccgccaccacaacag
cagctgctgcagcagcaacagatgcaacaacagcggccacaggcgtttgcacccaatatg
cgaccgccgttcccacccacgtctggcgccccaccgcagcagcagatgcctccgcgccca
cccatgccgccacctcagctccgtcccccacaacagcagcagcagcagcagccatggcga
ccgccacccatgtcacaacacgggtttccgcccagcagccagcagcagcctgcccggcct
ggcctgatggcgccaccgccacgcccaggattcttcccgcaacggatgccgatgagccag
ggcccgcgcatgatgccgccattctccatgggcccgccaccacacttccaacaacaacaa
cagcagcaccagcaacagttccctcgaccacccatgccaccaccagggcgcagatga
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integrated database retrieval system
