Salpingoeca rosetta: PTSG_12843
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Entry
PTSG_12843 CDS
T04136
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sre
Salpingoeca rosetta
Pathway
sre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTSG_12843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sre03041
]
PTSG_12843
03009 Ribosome biogenesis [BR:
sre03009
]
PTSG_12843
Enzymes [BR:
sre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PTSG_12843
Spliceosome [BR:
sre03041
]
Complex A
U2 snRNP components
U2 related factors
PTSG_12843
Complex B
PTSG_12843
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PTSG_12843
Ribosome biogenesis [BR:
sre03009
]
Eukaryotic type
90S particles
Helicases
PTSG_12843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
16069997
NCBI-ProteinID:
XP_004989452
UniProt:
F2UN04
LinkDB
All DBs
Position
Unknown
AA seq
595 aa
AA seq
DB search
MSVAQRVADEMDIALGQHVGYTIRFEDCTSPNTVLKYCTDGMLLREAMADPLLSRYGVII
LDEAHERTLSTDILMGLLKEIMPKREDLKLVVMSATLDAGKFQEYFNSCPRMDIPGRTFP
VEIFYTQEPERDYLEAAVRTAVQIHRVEEERGDILLFLTGQEEIEEACRKIKRECDALGS
EVGPVSVIPLYSSLPPALQQRIFEPAPADRPNGAVGRKVVVSTNIAETSITIDGIVYVID
PGFSKQKVYNPRVRVESLLVTAISKASAQQRAGRAGRTREGKAFRLYTEKAFRSEMQENT
YPEILRSNLSSVILQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGELTDL
GAKMSEFPLDPQLSKMLIASVGFKCSNEILSIAAMLSVPNCFLRPNDAKRAADEAKARFA
HVDGDHLTLLNVYHAYKQNSGSSQWCWDNFIQHRSMKSADEVRKQLARIMDRLGLERVST
NFHSKDYYLNIRRAMANAFFMQVAHLERSGHYLTIKDNQVVMLHPSTALDHKPEWVLYHE
FVLTSKNYIRTVTQIKPDWLLELAPHYYDMTNFPDCEARRILSRMLSRRAYQSRK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggcacagcgtgttgcggatgagatggacattgcgctgggccagcatgtcggt
tacaccatccgtttcgaggactgcacctccccaaacaccgtcctcaagtactgcacggac
ggtatgctgctgcgggaggcgatggctgatccgctgctgtcacgttacggcgtcatcatc
ttggatgaggcgcacgagcgcaccctctccacagacatcctcatgggcctcctcaaggag
attatgccgaagcgggaggacctgaagctggtggtgatgagtgccacgctcgacgccggc
aagttccaggagtacttcaacagctgcccccgcatggacattcccgggcgcacgtttccc
gtggagattttctacacgcaggagcctgagcgcgactacctcgaggctgctgtgcggacg
gcagtgcagatccaccgtgttgaggaggaacggggcgacattctgctgtttctgacgggt
caggaggagattgaggaggcctgcaggaagatcaagcgcgagtgcgacgccctcggctct
gaagttggcccggtgagcgtgattccgctgtattcgtcactgccaccggcgctgcagcag
cgcatcttcgagcccgcaccggcagatcgccccaacggcgccgttgggcggaaggttgtc
gtgtcgacaaacattgccgagacgtccatcaccattgacggaattgtgtatgtcatcgac
ccgggcttctcaaagcagaaggtgtacaacccgcgcgtgcgcgtggagtcgctgctggtg
acggccatctccaaggccagcgcacagcagcgcgcaggccgtgccgggcgtacgcgggag
ggcaaggcgttccggctgtacacggagaaggcgtttcgctccgagatgcaggagaacaca
tacccagagattctcaggtcgaacctgagctctgtgattctgcagctgaagaaacttggc
attgacgatttggtgcattttgactttatggacccgccggcgcctgaaacgctcatgcgc
gcactcgaactcctcaactacctcggcgccctcgacgacgagggcgagctgacggatctc
ggggcgaagatgtccgaattcccgcttgacccgcagctctctaagatgctgattgcgtct
gtcgggttcaagtgctcgaacgagattctgtccattgcggcgatgctctctgttccaaac
tgcttcctccgccccaacgatgcaaagcgcgccgcagacgaggcaaaggccaggtttgcg
cacgtggacggggaccacctgacgctgctaaacgtgtatcacgcgtacaagcaaaactcg
ggcagttcgcagtggtgctgggacaactttatccagcaccgttccatgaagagcgcagac
gaagtcaggaagcagcttgcgcgcatcatggaccgccttgggctggagcgcgtgagcacc
aacttccacagcaaggactactacctcaacatccgccgcgcaatggcaaacgctttcttc
atgcaggttgcgcaccttgagcggtctgggcattacctgacgatcaaggacaaccaggtt
gtgatgctgcacccgtcgacggcgctcgaccacaagcccgagtgggtcctctaccacgag
tttgtcctcacatcaaagaactacatccgcaccgtcacccagatcaagccagactggctg
cttgaactggcgccccactactacgacatgaccaacttcccggactgcgaggcgcgccgc
atcctctcccgcatgctctcccgccgcgcataccagagccgcaaatga
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