Salpingoeca rosetta: PTSG_12984
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Entry
PTSG_12984 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K15172
transcription elongation factor SPT5
Organism
sre
Salpingoeca rosetta
Pathway
sre03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
PTSG_12984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sre03021
]
PTSG_12984
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_12984
Transcription machinery [BR:
sre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
PTSG_12984
RNA polymerase I system
PTSG_12984
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
PTSG_12984
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW
KOW4_SPT5
KOW5_SPT5
KOW2_Spt5
KOWx_SPT5
KOW7_SPT5
Spt5-NGN
KOW1_SPT5
FKBP26_IF
MSSS
Motif
Other DBs
NCBI-GeneID:
16069508
NCBI-ProteinID:
XP_004988966
UniProt:
F2UPD0
LinkDB
All DBs
Position
Unknown
AA seq
1092 aa
AA seq
DB search
MSDPRAVLSSDEEDEVPETQAPMSNGSKNKKAGEGGGSLLADYRDDDYGDDEDEDEDADM
DEDDEDEDDYDDDEDDYASAKRRKNTGGRRPRKRKKASGRDFIDEAEVGDEEEEVDDDEA
ELHMPETAYDRMAEKHWATTQQKRQQRGDVLAEMEKRYREQAQRYEEASAVSQGAGAAMA
EDLDDFIERDEEPGAMMGEEEAGISLAEPEIQPTKDDPIVWAVRCKPGGEQEAAIKLMRK
AMQAAMKGEPLAIKSVIGYRQQRVVGGRSYIYVEAYSREHVKHAIAGIEELVYGQWTQEL
VEMEARPALLRVKKRKINVKPNQWVRIKRGIYANDLAKVVRVNATVDPPRVEVHLVPRID
LTPQRRKKNARKFRPPQRLFNRDEIDQAIPDAEVMWDSLRDEYRFENNAYTESGFLIKRI
PISGVLTSAIKPTLEELSMFEMTEDAHVEMELPDEPSLQPAFAVGDRVEVVGGDLKNLTG
EILSINASSQQVEIRPDSDELKKTGITRIPLPISEVRKAFHMGDQVKVNHGRYKGETGLV
LRVTDDFVSVLSDLSLKEIRVLASDLEMTTTVASGRDVLGQFRLHDLVQFNNANVVGCII
RIENEQLKILDQRGQERDVRPQEVRPRQRRGSPQALDKHQNVIGTGLSVKAVDGPNKGRE
GKVLHIHRRFVFVRQPSILDRGGIFVANANHLQVVGASTRPAANMTGAESPRAVLSRSTG
GAAPRGGGGRGRGGRPRRDPLFHKLVIVTSGPHKGKQGIVKDATPTNARIELQSLCRTIT
VDRQAIKEASTLNRATTSLSTPFGGPQMGGVQHGAQTPLYGAQTPSYGGSRTPHYTGSET
PRLGAETPGSRTPGYDYNDSAWNPNVPNTPAPDTPAGRSPAFQQTAEWDVSDVTSEPASV
RAETPHAGPATPGQPNTPGDRSYNAAFTPAWESGYSGSTPTAGTPGFGAPATPGTGSTPG
MPPATPGTHMPATPGEAVGTSGAGGAPWLVPTVSVRVVSSGQQGTISNVDGGSVSVALDD
GSATTAPAEDLTPIDPVKNDRVYVMEGDQQGMRGMLVSIDGVEGVVKFFDPPSLKIIPMA
QLTRCAADAAAA
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatccacgcgcggtgctgtcgagcgacgaggaggatgaggtgccagagacgcag
gctcccatgagcaacgggtcgaagaacaagaaggcaggagaaggaggtggcagcctcttg
gcagattaccgcgacgatgactatggcgatgacgaggacgaggatgaggacgcggacatg
gacgaggacgatgaggacgaagacgactatgacgacgacgaggatgactacgcctcggcc
aagcgccgcaagaacactggcggccggcgcccacgcaagcgcaagaaggcgagcggccgt
gactttatcgacgaagctgaggttggcgacgaagaagaagaagtggatgatgatgaggct
gagctgcacatgccggaaacggcatacgaccgcatggccgagaaacactgggccaccacg
cagcagaagcgccaacagcgcggcgatgtcctggcggaaatggagaagcgatacagagaa
caggcgcagaggtacgaggaggcgtctgccgtgtcgcagggggcgggcgccgccatggcc
gaggacctcgacgactttatcgagcgcgacgaagagcctggcgcaatgatgggcgaggag
gaggccggcatctcccttgcagagcccgagattcagcctacaaaggatgacccgattgtg
tgggcggtgcggtgcaaacccggcggtgagcaggaagcggcgatcaagctgatgcgcaag
gcaatgcaggccgccatgaagggcgaacccctcgctatcaagagcgtcatcggatacagg
cagcagcgggttgttggtgggcggtcgtacatctacgtggaggcgtacagcagagaacac
gtcaagcacgcaattgctggcattgaggagcttgtgtatgggcagtggacgcaggagctg
gtggagatggaggcacgccccgccctcctgcgcgtcaagaagaggaaaatcaacgtgaaa
ccgaaccagtgggtgcggattaagcgcggcatctacgccaacgacctcgcaaaggttgtg
cgggtgaatgcgacggttgacccgccgcgcgttgaggtgcacctcgtcccgcgcatcgac
ctcaccccgcagcgccgcaagaagaatgcgcgcaagttccgcccgccccagcgcctcttc
aaccgcgatgagattgaccaggccatcccagacgcggaggtgatgtgggacagcttgcgt
gacgagtaccggtttgagaacaacgcgtacacggagtctggattcctcatcaagcgcatc
cccatttcgggcgtgctcacctcggctatcaagccgacgcttgaagagctgtcgatgttt
gagatgacggaggatgcgcacgtggagatggagctgcctgacgagccctcgctccagccc
gcattcgctgttggcgatcgcgtcgaggtcgtcggcggtgacctcaagaacctcacaggt
gagattctgtccatcaacgcgagttcgcagcaggtggaaatccggcccgacagcgacgag
ctcaagaagacgggcattacgcggatcccgttgcccatctcggaggtgcgcaaggcgttc
cacatgggcgaccaggtcaaggtcaaccacggcagatacaagggcgagaccggccttgtt
cttcgtgtgacggatgacttcgtcagcgtgctctccgatctctccctcaaggagattcgc
gtgcttgcaagcgatcttgagatgacgacgacggtggcgtctggccgcgacgtgctcggg
caattccggctgcacgatctggtgcagttcaacaacgccaacgtcgtcggctgcatcatc
cgcatcgagaacgaacagctcaagatccttgaccagcgcgggcaggagcgtgatgtgcgc
ccgcaagaggtgcggccgcgccagcgccgcggatcaccacaggcgctcgacaagcaccag
aacgtcattggcacgggcctcagcgtcaaggccgtcgacgggccaaacaagggccgtgag
gggaaagtgctgcacatccaccgacggtttgtgtttgtgcggcagccgtccatccttgat
cgcggcggcatcttcgtcgcaaatgcaaaccaccttcaggttgttggcgcgtcgacccgc
cccgctgcaaacatgacgggtgcagagtcgccgcgtgccgtgctcagccggtcgacgggc
ggcgctgcccctcgcggtggcggcggtcgtggtcgcgggggccgtccgcgcagggacccg
ctcttccacaagctcgtcatcgtcaccagcgggccgcacaagggcaagcagggcattgtg
aaggatgcgacaccaacaaatgcgcgaatcgagctgcagagcctttgccggacaatcacc
gtcgatcggcaagccatcaaggaggcttccacgctcaaccgcgccaccacctccctctca
accccgtttggcggacctcagatgggcggtgttcagcacggtgcacagacgccgctgtac
ggcgcacagacaccgagctatggcggatcccgcacgccacactacacgggatcagagacg
ccgcgccttggcgcggagacgcctggcagccgcacacccgggtacgactacaacgactct
gcgtggaaccccaacgtgcccaacacccctgccccggacacacccgccgggagaagccct
gccttccagcagacggccgagtgggacgtgtccgatgtcaccagcgaaccggcgagcgtg
cgtgcggagacaccccacgctgggcctgccacccctgggcagccgaacaccccgggagac
aggagctacaacgcagccttcaccccggcatgggagtcaggatacagtggatccacgcca
accgcaggaacgccaggctttggtgcgccagcaacacctggcacgggctccacccctggc
atgccacccgccacccccggcacacacatgcctgcaacgcccggggaggcagtcggcacg
agcggtgctggcggtgcgccgtggctcgtgccaaccgtctccgtccgcgtcgtctcgtcc
gggcagcagggcacgatttcaaatgttgacggcggcagcgtctctgttgcgctggatgat
ggcagcgccaccaccgcccccgccgaggaccttacgcccatcgaccccgtcaagaacgac
cgggtgtatgtgatggaaggcgaccagcagggcatgcgtggcatgctcgtcagcatcgac
ggcgtggagggcgtcgtcaagttctttgatccaccttcgctgaagattatccccatggcc
cagctgacgcgctgcgctgccgacgctgccgccgcttaa
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