Salpingoeca rosetta: PTSG_13104
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Entry
PTSG_13104 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_13104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_13104
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PTSG_13104
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PTSG_13104
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
HSBP1
DUF5646
Motif
Other DBs
NCBI-GeneID:
16068731
NCBI-ProteinID:
XP_004988204
UniProt:
F2URH3
LinkDB
All DBs
Position
Unknown
AA seq
592 aa
AA seq
DB search
MAGARKLQGEIDKCVKAVNELSDQFDFTWEKAENATNSNQKDKFEAELKKLIKKLQKFRD
QIKTWLTSSDAKTQEKMLKEYRRKIEVRMERYRDLERDAKTKAYSKEGLDRQARLDPEEQ
EKKDMQDWINKTMDELRVRIDLLEASLVAKGKRKKASLSDDEVENRKFWIQSHKIHISRL
ELLLKLLDNDSVPAAQIEPLQDEFETYFDENENSDFYETDWFYEDLEEFLRDNGMPGALE
PPEIPLEPEPPKEEDKKKDKKKKKKKEKKSTSTAASEKSTPKTAPSAPAGAVTTSNGNGS
NKVAATPTKAKPATATATATAAAGGKGKAVPGTPAKGSKGGPTAAASTPTKPAPASTSSS
TTTAAAAAAAAGGKTATTAATTKSSSSSSSSAAPGARGGVVLPPSPSKGPALPRQSSAPA
ASPAKAAPAINFAAAARRRLMLGRLRPNHLARQQHPAHRQLRDVEDFLTITGGSYRPEMP
RQGPIHYPTLPLNLFETTEIYSKLLDTTLFFIFYHRPEQSEAFEIGNYRYFDFAHWVEKE
LSSFRFEYEHLERSVPPTPAQPQSQQQQQQQQQQQRSRSRNDASQPQSKIRT
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggctggagcgagaaaacttcaaggagaaatcgacaaatgcgtaaaagctgtgaacgag
cttagtgatcagtttgactttacatgggagaaggccgaaaatgcgaccaactcgaaccag
aaggacaagtttgaggctgagctgaagaagctcatcaagaagcttcagaaattccgggac
cagatcaagacatggctgacgagctccgacgcaaagacgcaggagaagatgctcaaggag
tacaggcgaaaaatcgaagtgcgaatggagcggtatcgggacttggaacgcgatgcaaaa
acaaaggcctactctaaagaagggcttgaccggcaggcgcggcttgaccccgaggagcag
gagaagaaggacatgcaggactggatcaacaagacgatggacgagctgcgggtgcgcatc
gacctcctcgaggcctcgctcgtcgcaaagggaaagcgcaagaaggcctccctctccgat
gatgaggttgagaaccgcaagttctggatccagagccacaaaatccacatcagccgtctc
gagctgctgctgaagctgctcgacaacgactctgtgccggcggcgcagattgagccgctg
caggacgagtttgagacgtactttgacgagaacgagaacagcgacttttacgagacggac
tggttctacgaggacctcgaggaattcctcagagacaacgggatgcctggagcgttggaa
ccgccagaaattccactcgagcctgagccaccaaaggaagaggacaagaagaaggacaag
aagaagaagaagaagaaggagaagaagtccaccagcaccgcagcatcggaaaagtcgacg
cccaagacggcgccatctgcgcccgcaggagcagtgacaactagcaacggcaacggcagc
aataaggttgcagccacgccaacaaaggcaaagccagcaacagcaacagcaacagcaaca
gccgcagcaggagggaagggcaaggctgtgccggggacgccagccaagggcagcaaaggc
ggcccaacagcagcagcgagcaccccaaccaagcccgcgccagcatcaacctcctcatcc
accacaacagcagcagcagcagcagcagcagcgggcggcaagacggcaacaacagcagcg
accacaaagtcatcatcatcgtcgtcgtcgtcggcggcacctggagcgcgcggtggtgtt
gtactgccgccgtcaccgagcaaagggccggccctcccgcgccagtcgtcagctccggcc
gcatccccagcaaaggctgcacccgccatcaactttgctgcagccgcaaggcgtcgcctg
atgttgggccggctgcgccccaatcacctcgccaggcagcagcaccccgcccaccggcaa
ctgcgggacgttgaggacttcctgacgattacgggcgggtcgtatcgaccggagatgccg
cggcaagggcccatccattacccgacgctcccgctcaacctctttgaaacaacggagatc
tactcaaagctgctggacacaacgctcttcttcatcttctaccacagacccgaacaatcg
gaagcgtttgagattggaaactacagatactttgactttgcacactgggttgagaaggag
ctgtcgagtttccgctttgagtacgagcatttggaacgatccgtgcccccaacgccagcg
cagccgcaatcacaacaacagcaacagcaacagcaacaacaacagcgttcgcgaagtcgc
aatgacgcgtctcagccgcaatccaagattcgcacatga
DBGET
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