Sediminicoccus rosea: LHU95_03015
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Entry
LHU95_03015 CDS
T08103
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
srf
Sediminicoccus rosea
Pathway
srf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHU95_03015 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srf03019
]
LHU95_03015 (pnp)
03016 Transfer RNA biogenesis [BR:
srf03016
]
LHU95_03015 (pnp)
Enzymes [BR:
srf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LHU95_03015 (pnp)
Messenger RNA biogenesis [BR:
srf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LHU95_03015 (pnp)
Transfer RNA biogenesis [BR:
srf03016
]
Prokaryotic type
tRNA degradation factors
LHU95_03015 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
UPY37680
LinkDB
All DBs
Position
631262..633481
Genome browser
AA seq
739 aa
AA seq
DB search
MFDNYFRKDISWGGQILTLETGKIARQADGAVMARLGDTIVLCTVVGARGVKPGQDFFPL
TVNYQEKAFAAGKIPGGFFKREGRPSESETLICRLIDRPLRPLFPEGFRNEVQVIATVLS
HDLENDPDIVALVGCSAALTLSGIPFFGPVGAARVGWIDGGYVLNPTAAQRKLSKLDLVV
AGTAEGVLMVESEAQELSEDIMLGAVKFGHEQFQAVIQGIIALAEVAAKEPWDVAIEDPA
KTPLKARIAELGTAAMAEAYKITEKLTRQKAVGAAKKTVMAALEAEGADLTAAKGMMKEL
EADVVRNAILDTGLRIDGRDTKTVRSILAEVGVLPRAHGSALFTRGETQALCVATLGTGQ
DEQIIDALAGEYRENFMLHYNFPPYSVNETGRMGSPGRREVGHGKLAWRAIHPVLPEKDK
FPYTMRVVSEITESNGSSSMATVCGTSLALMDSGCPLIRPVAGIAMGLIKEDRGFAVLSD
ILGDEDHLGDMDFKVAGTEAGITALQMDIKITSITFDIMRTALDQAKDGRFHILGEMAKA
ITGARGEMAATAPRITVIQVPKDKIRDVIGTGGKVIREIVEQTGTKIDIEDDGTIKIASS
NPEATQAAIDRIKGITAEAEIGAIYNGKVVKTAEFGAFVNFLGAKDGLVHISELANERVN
RTSDIVKEGDAVKVKVIGFDDRGKVKLSMRVVDQATGADITEQVGERRPSPRGEGGEGGE
ERPRREGRGDRGPRRSYND
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaactatttccgcaaggatatctcctggggcggccagattctgacgctggag
acgggcaagatcgcccgccaggccgatggcgccgtgatggcccgcctgggtgacaccatc
gtgctctgcaccgtggtcggcgcccgcggcgtgaagcccggccaggatttcttcccgctg
accgtgaattaccaggaaaaggccttcgcggccggcaagatcccgggtggcttcttcaag
cgcgaaggccgcccctccgagagcgagacgctgatctgccgcctgattgaccgcccgctg
cgccccctcttccccgagggtttccgcaacgaggtgcaggtcatcgccaccgtgctgagc
catgacctcgagaacgatcccgacatcgtggccctggtcggctgctcggcggcgctcaca
ctgtccggcattccgttcttcggcccggtgggcgccgcgcgcgtgggctggatcgatggc
ggctatgtgctcaatccgacggccgctcagcgcaagctgtccaagctcgatctcgtcgtc
gccggcacggccgagggcgtgctgatggtggaatccgaagcgcaggagttgtcggaagac
atcatgctgggcgccgtgaaattcggccatgagcagttccaggccgtcatccagggcatc
atcgccctggccgaagtggccgcgaaggagccctgggatgtcgcgatcgaggaccccgcc
aagacgccgctgaaggcccgcatcgccgagcttggcacggccgccatggccgaggcctac
aagatcaccgagaagctgacgcgccagaaggccgtgggtgccgccaagaagaccgtcatg
gccgcgctggaagccgaaggcgccgacctcacggccgccaagggcatgatgaaggagctg
gaagcggatgtcgtccgcaacgccatcctcgacaccggcctgcgcattgatgggcgtgac
accaagaccgtccgctccatcctggccgaagtcggcgtgctgccgcgcgcgcatggttcg
gcgctgttcacccgtggcgagacgcaggcgctctgcgtcgcgaccctcggcaccggccag
gatgagcagatcattgacgctctcgcgggcgaataccgcgagaacttcatgctgcactac
aacttccctccctactcggtgaacgagacgggccgcatgggttcgcccggtcgtcgtgaa
gtgggccatggcaagcttgcctggcgcgcgatccacccggtgctgccggagaaggacaag
ttcccgtacaccatgcgcgtcgtctccgagatcacggagagcaacggctcctcctcgatg
gcgaccgtctgcggcacctcgcttgcgctgatggatagcggctgcccgctgatccgcccg
gtggccggcattgccatgggcctgatcaaggaggatcgcggcttcgcggtgctcagcgac
atcctgggcgacgaggatcacctcggcgacatggatttcaaggtggccgggacggaggcg
ggcatcacggccctccagatggacatcaagatcacctccatcaccttcgacatcatgcgc
accgcgctggatcaggccaaggatggccgcttccacatcctgggcgagatggccaaggcc
atcaccggcgcccgcggcgagatggcggcgaccgcgccgcgcatcaccgtgatccaggtg
ccgaaggacaagatccgtgacgtgatcggcacgggcggcaaggtgatccgcgagatcgtc
gagcagaccggcaccaagatcgacatcgaggatgacggcaccatcaagatcgcctccagc
aatccggaagcgacccaggccgccattgaccgcatcaagggcatcacggccgaggccgag
atcggcgccatctacaatggcaaggtcgtgaagaccgccgaattcggcgccttcgtgaac
ttcctgggcgccaaggatggcctggtgcacatcagcgaactcgccaatgagcgcgtgaac
cgcaccagcgacatcgtcaaggaaggcgatgccgtgaaggtcaaggtcatcggcttcgat
gatcgcggcaaggtgaagctctccatgcgcgtggtggaccaggcgacgggtgcggacatc
accgaacaggtgggcgagcgccgtcccagcccgcgcggcgaaggcggcgagggtggcgag
gagcgtccgcgccgtgaaggccgcggggaccgtggcccccgccggagctacaacgactga
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