Sediminicoccus rosea: LHU95_06905
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Entry
LHU95_06905 CDS
T08103
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
srf
Sediminicoccus rosea
Pathway
srf03030
DNA replication
srf03430
Mismatch repair
srf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LHU95_06905 (dnaE)
03430 Mismatch repair
LHU95_06905 (dnaE)
03440 Homologous recombination
LHU95_06905 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srf03032
]
LHU95_06905 (dnaE)
03400 DNA repair and recombination proteins [BR:
srf03400
]
LHU95_06905 (dnaE)
Enzymes [BR:
srf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LHU95_06905 (dnaE)
DNA replication proteins [BR:
srf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LHU95_06905 (dnaE)
DNA repair and recombination proteins [BR:
srf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LHU95_06905 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF6374
VRP3
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UPY38417
UniProt:
A0A9E7D225
LinkDB
All DBs
Position
1523670..1527143
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDSFIHLHTHSAYSLSEGAIKVEKLPGLALAANMPAVALTDTANLFGALEFAQYASGKG
IQPIMGCQLWLSRAATGEERPEALRAGADVIVALAMNATGLDNLQRLSSLGWLGEDASGK
PALALDQLLTHAPGLMLLTGGDHGPLSRLLAEGRRDAAERLLRALGEAFDGRLVVELMRH
HTERQQAIEPGLLRLADEAGLPIVATNDVYFAEAKTHIAHDALLCIAEGRLVAEQNRRRV
TPHHWFKPASEMRALFADLPEACDNTLAIARMCAVMAESKKPELPICPKVLPGKTEAETV
ANMARAGLARRFPEGVPPVHAERLEYELGVIEQMGFSGYFLIVADFIQWAKEQGIPVGPG
RGSGAGSVAAWALSITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDRRDEVIDYVRRE
YGADRVAQIITFGKLQAKAAVRDVGRVLGMPYGQVDKIASLIPNNPANPVSLGDAIKGEP
KLQDMQENDEAVAKLLDTALQVEGLYRNASTHAAGVVIGRKPLVEITPIYRDPRSPSLIT
QYSMKYVEQASLVKFDFLGLKTLTVLQRAVQLLKARGIEVDLDKLPLDDERTYAMLAKGD
AAGVFQFEGQGMRDCLRSMRPDRFEDLIAAVSLYRPGPMENIPAYCARKHGEPWAAPHPS
IQDILGETYGIMVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKDAAAMAKQRAIFCEGAE
KNGVPAEKAGEVFDLMEKFANYGFNKSHAAAYALVAYHTAWLKANHPVAFLAASMSLDLD
KTEKLASHMQEASRVGIKVLPPDINRSGAEFTIEELPPAPAMNAPGEAAREDRAAAGPAI
RFALAAVKRVGLQAMRELVAARDAPFASLADFAARVDPKLLNKMQLENLAKAGAFDSLEG
NRARLVAGAETVLRRAQATAEDRASNQIGLFGEVEQGPPLLRLPDIPDWPQLDKLGFEAE
AVGFHLSAHPLDEYKGALRRLGATPSAVIADRVRAGSTRLKLAGTVTAKKERNTRTGSRM
AWISLTDQAGSFEVTFFSEVLNRSRDMLEEGTALLITTDAKLEGEALRLTAQDVERLDKA
AAGVGQGMRIFIEAASAVPDIRNILERDGRGKGRVSLVPRLAPGQEVELTLPGGWNVSPR
MMQAMKLVAGVASVEEV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattccttcatccacctgcacacccattccgcctattcgctgagcgaaggcgcc
atcaaggtggagaagctgccgggcctggcgctcgccgccaatatgcccgccgtggcgctg
accgatacggcgaatctctttggcgcgctggaattcgcgcaatacgcctcgggcaagggc
attcagcccatcatgggctgccagctctggctctcgcgcgccgccacgggtgaggagcgg
cccgaggcgctgcgcgcgggtgcggatgtgatcgtcgcgctggcgatgaacgcgaccggg
ctggacaatctccagcgcctctcctcgctcggctggctgggtgaggatgcttcgggcaag
ccggccctggccctggatcagctgctgacccacgcgcccggactgatgctgctgaccggt
ggggatcatggcccgctgtcacgcctgctggcggagggccggcgggatgcggcggagcgc
ctgctccgcgcgctgggcgaggccttcgatggccgcctcgtcgtggaactcatgcgccac
catacggagcgccagcaggcgatcgagcctggcctgctgcgcctggccgatgaggcgggc
ctgcccatcgtcgccaccaatgatgtctatttcgccgaagcgaaaacccatatcgcgcat
gacgcgctgctctgcatcgccgaggggcgcctggtggccgagcagaaccgccgccgcgtc
acgccgcatcactggttcaagccggccagcgagatgcgcgccctcttcgccgacctgccc
gaggcctgcgataacacgctggccatcgcgcgcatgtgcgccgtcatggcggaatcgaaa
aagcccgagctgccgatctgccccaaggtgctgcccggcaagacggaggccgagaccgtc
gccaatatggcgcgtgcgggcctggcgcgccgcttccccgagggggttccgcctgtccac
gcggagcggctggaatatgagctcggcgtgatcgagcagatgggcttctccggctatttc
ctgatcgtggccgacttcatccaatgggcgaaggaacagggcattccggtcgggcccgga
cgtggctcgggggcgggttccgtcgccgcctgggcgctctccatcaccgatctcgatccg
ctgcgcttcgggctgctgttcgagcgtttcctcaaccccgaacgcgtttccatgcccgac
ttcgacattgatttctgccaggaccggcgggatgaggtgatcgactatgtccgccgggaa
tatggcgcggatcgcgtggcgcagatcatcaccttcggcaaattgcaggcgaaagcggcg
gtgcgcgatgtgggacgcgtgctgggcatgccctatggccaggtggacaagatcgccagc
ctgatcccgaacaatcccgccaatcccgtcagcctgggcgatgccatcaagggcgagccg
aagctccaggacatgcaggaaaacgacgaggccgtggccaagctgctggacacggcgctc
caggtggaagggctgtaccgcaacgcctccacccatgcggccggcgtggtcatcggccgc
aagccgctggtggaaatcacgccgatctatcgcgatccgcgctcgccctcactcattacg
caatactcgatgaagtatgtcgagcaggcgagcctggtgaagttcgacttcctgggcctc
aagacgctgacggtgctgcaacgcgcggtgcaactcctgaaggcgcgcggcatcgaggtg
gacctcgacaaactgccgctggatgacgaacgcacctatgccatgctggccaagggcgat
gcggccggcgtcttccagttcgaaggccagggcatgcgggactgcctgcgctccatgcgc
cccgaccgcttcgaggatctgatcgccgccgtctcgctctaccggccgggcccgatggaa
aacatcccggcctattgcgcccgcaagcatggcgagccctgggcggcgccgcacccctcc
atccaggacatcctgggcgagacctatggcatcatggtctatcaggagcaggtgatgcag
atcgcgcaggtcatggcgggctattcgctcggcggtgccgacctgctgcgccgcgccatg
ggcaagaaggacgcagccgccatggccaagcagcgcgccatcttctgcgaaggtgccgag
aagaacggcgtaccggccgagaaggcgggcgaagtctttgacctcatggagaaattcgcc
aattacggcttcaacaagtcgcacgcggcagcctatgcgctggtcgcctatcacacggcc
tggctgaaggcgaaccatcccgtggccttcctggcggcctccatgtcgctcgatctcgac
aagacggagaagctcgcctcccacatgcaggaggcgtcgcgtgtcggcatcaaggtgctg
ccgccggatatcaatcgcagcggcgcggaattcacgatcgaggagctgccacctgcgccg
gcaatgaacgcccccggcgaggcggcccgcgaggatcgcgccgcggcgggccccgccatc
cgctttgccctggccgccgtgaagcgcgtcggcctgcaggcgatgcgtgaactggtcgcg
gcgcgcgatgcgccctttgccagcctcgctgatttcgcggcgcgggtggaccccaagctg
ctgaacaagatgcagctggaaaacctcgccaaggcgggtgcctttgacagcctggagggc
aaccgcgcccgcctggtcgccggtgcggagacggtcctgcgccgcgcgcaagccacggcc
gaggaccgcgcgagcaaccagatcggcctgtttggcgaggtggagcaggggccgcccttg
ctgcgcctgcccgacatccccgactggccgcagctcgacaagctgggcttcgaggcggag
gccgtgggtttccatctctcggcccacccgctggatgaatacaagggcgcgctgcggcgc
ctgggtgccacgccttccgccgtgatcgcggatcgggtgcgggccggttccacccggctg
aaactggcgggcacggtcaccgccaaaaaggagcgcaacacccgcaccggcagccgcatg
gcctggatcagcctgaccgaccaggccggcagcttcgaggtgaccttcttcagcgaagtg
ctgaaccgctcccgcgacatgctggaggagggcacggcgctgctgatcaccacggatgcg
aagctggaaggcgaggcgctgcgcctcaccgcgcaggatgtcgagcggctggacaaggcg
gccgccggcgtggggcaggggatgcgcatcttcatcgaggccgcgagcgcggtgcccgac
atccgcaacatcctggagcgcgacgggcgcggcaaaggccgcgtcagtctggtaccgcga
cttgcccccgggcaggaggtggaattgacgctgcccggcggctggaatgtctcgccgcgg
atgatgcaggcgatgaagctggtggcgggtgtcgccagcgtggaggaggtttag
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integrated database retrieval system
