Sediminicoccus rosea: LHU95_17850
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Entry
LHU95_17850 CDS
T08103
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srf
Sediminicoccus rosea
Pathway
srf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LHU95_17850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srf03021
]
LHU95_17850 (rpoC)
03400 DNA repair and recombination proteins [BR:
srf03400
]
LHU95_17850 (rpoC)
Enzymes [BR:
srf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LHU95_17850 (rpoC)
Transcription machinery [BR:
srf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LHU95_17850 (rpoC)
DNA repair and recombination proteins [BR:
srf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LHU95_17850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UPY36063
UniProt:
A0A9E7D1D1
LinkDB
All DBs
Position
complement(3754962..3759143)
Genome browser
AA seq
1393 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKISMASPEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIVCEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRVGLMVDMSLKELEKVLYFESYVVLEPGLTDLKLHSLLNEDQFVAKQDEFGEDAFRVG
IGAEAVKEILHGMEMAKDAVRLRAELKETTSEAKRKKLVKRLKLIEAFSESGARPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHASTIKQAKRMVEKERPEVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLDTPEFRVAEDDKAPRIGDIGEIEH
ALEVKALTIHTKILTRRATVDADGKPVVERVITTPGRMLMGALLPKHPALPFSLINRLLT
KKSISDVIDAVYRHCGQKESVIFADRLMGLGFKHAAKAGISFGKNDMMIPAEKEGFIAST
KAEVKEFEQQYLDGLITSGERYNKVVDAWSRCTDEVAKAMMAEIQKQEIGKPTNSVWMMS
HSGARGSPAQMRQLAGMRGLMAKPSGEIIEQPIISNFKEGLTVLEYFNSTHGARKGLADT
ALKTANSGYLTRRLVDVAQDCIIMEDDCGTERGLNVRAIMDGGDVVSSLSERILGRTTQE
DVLDPATGEVIIAKNMLVEEADAEAIEKAGVEGVKIRSVLTCESLQGVCGHCYGRDLARG
TPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSAVEATVDSTVKLHNLSLV
TNSSGAPIVMSRNCEVGLLDANGRERARFRVPYGAKMIITDGAKVERGQKLAEWDPFTLP
IITEREGKVEYQDLIEGVTLVEKTDDVTGLTSKVVVDYKATAKSADLRPRIVMKDARGEI
MKLPNGTEARYFLNPDTVLSVDHGATVEAGDVVARMPRESSKTRDITGGLPRVAELFEAR
RPKDAAIISDIDGRVEFGKDYKAKRRVIVKSEPMGDEPPLEREYLVPKGKHVSVQEGDYV
KAGDPLVDGPRVPHDILRVLGVEALANYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQKV
EILEPGDTTYLIGEQVDRFEFDAENEKRLRVGERPARAEPVLQGITKASLQTQSFISAAS
FQETTRVLTEAATAGKVDTLGGLKENVIVGRLIPAGTGSVMNRLKVLAARRDSGRLPAVP
ALAEPETSPAAAE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagctgatgaagatcctgggccaaaccggccaggcgatgacctttgaccagatc
aagatctccatggcatcgccggagcagatccgctcctggtcctatggcgagatcaagaag
cccgaaaccatcaactaccggaccttcaagccggagcgggacgggctgttctgcgcccgc
atcttcggcccgatcaaggattacgagtgcctctgcggcaagtacaagcggatgaagttc
cgcggcattgtctgcgagaagtgcggcgtggaagtgacgctcgccaaggtccggcgcgag
cgcatgggccatatcgagcttgccgctcccgtggcgcatatctggttcctgaagagcctg
cccagccgcgtcggcctcatggtggatatgagcctgaaggagctggagaaggttctgtat
ttcgagagctatgtggtgctcgaaccgggcctgaccgacctcaagctacattcgctgctg
aacgaggatcagttcgtcgccaagcaggatgagttcggcgaggacgccttccgtgtgggc
atcggcgccgaggcggtgaaggaaatcctgcatgggatggagatggcgaaggacgccgtc
cgcctgcgcgccgagctgaaggagacgacctccgaagccaagcgcaagaagctggtgaag
cggctgaagctgatcgaggctttctccgaatccggcgcgcgtccggaatggatgatcctc
gacgtggtgccggtcatcccgcccgagctgcgcccgctggtgccgctggatggtggccgc
ttcgcgacctcggatctgaatgacctgtatcgccgcgtcatcaaccgcaacaaccgcctg
aagcgcctgatcgagctgcgcgcgccggacatcatcgtgcgcaatgagaagcgcatgctg
caggaatcggtggatgcgctgttcgacaatggccgccgcggccgcgccatcacgggtgcc
aacaagcgcccgctgaagtcgctctcggacatgctgaagggcaagcagggccgcttccgg
cagaatctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggcccg
gagttgaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccc
ttcatctactcgaagctcgaaaaatacggccacgccagcaccatcaagcaggcgaagcgc
atggtggaaaaggagcgtcccgaggtctgggacatcctggaagaggtgatccgcgagcac
ccggttctgctgaaccgcgcccccacgctgcaccgcctgggcatccaggccttcgagccc
gtgctggtcgagggcaaggcgatccagctgcacccgctggtctgcaccgccttcaacgcg
gatttcgacggcgaccagatggccgtgcacgtcccgctgagccttgaggcccagctggaa
gcgcgcgtgctgatgatgtccaccaacaacatcctcagccccgccaacggcaagccgatc
atcgtgccgagccaggacatcgtgctcggcctctattacctcagcctcgacacgcccgaa
ttccgcgtggccgaggacgacaaggcgccgcgcatcggtgacatcggtgagatcgagcac
gccctcgaggtgaaggcgctgacgatccacaccaagatcctgacgcgccgcgccacggtg
gatgccgatggcaagcccgtggtcgagcgcgtgatcacgacgccggggcgcatgctgatg
ggcgctctcctgcccaagcacccggcgctgcccttctccctgatcaaccggctgctgacc
aagaagtccatctcggacgtgattgacgccgtctatcgtcactgcggccagaaggagagc
gtgatcttcgccgaccgcctgatgggcctcggcttcaagcacgcggccaaggccggcatt
tccttcggcaagaacgacatgatgatcccggccgaaaaggagggcttcatcgcctccacc
aaggccgaggtgaaggagttcgagcagcagtatctggatggcctgatcacctcgggcgag
cgctacaacaaggtggtggacgcctggtcgcgctgcacggatgaagtggccaaggccatg
atggccgagattcagaagcaggagatcggcaagccgaccaactccgtctggatgatgagc
cattccggcgcgcgtgggtcgccggcgcagatgcgccagctggccggcatgcgcggcctg
atggccaagccctcgggcgagatcatcgagcagccgatcatctcgaacttcaaggaaggc
ctgaccgtgctggagtatttcaactccacccacggcgcccgcaagggcctggccgacacc
gcgctgaagacggcgaactccggttacttgacgcggcgtctggtggacgtggcgcaggac
tgcatcatcatggaagatgattgcggcacggagcgtggcctgaatgtccgcgccatcatg
gatggcggcgatgtggtgtcctcgctcagcgagcgcatcctgggccgcaccacgcaggaa
gatgtgctggacccggcgacgggtgaagtcatcatcgccaagaacatgctggtcgaggag
gccgatgccgaggcgatcgagaaggccggtgtcgagggggtgaagatccgctcggtgctg
acctgcgagtcgctccagggcgtttgcggccattgctatggccgtgacctggcgcgcggc
acgccggtgaacatgggtgaggccgtcggcgtcatcgcggcccagtccattggcgagcct
ggcacgcagctcaccatgcgcaccttccatatcggtggggccgcgcagcgcggtgccgag
caatcggcggtggaagccacggtggattcgaccgtgaagctgcacaacctctcgctggtc
acgaactcctccggcgcacccatcgtgatgagccggaattgcgaagtgggcctgctggac
gccaatggccgcgagcgcgcgcggttccgcgtgccctatggcgccaagatgatcatcacg
gatggtgccaaggtcgagcgtggccagaagctggccgagtgggaccccttcaccctgccg
atcatcacggagcgcgaaggcaaggtcgaataccaggacctgatcgagggcgtcacgctg
gtcgagaagaccgatgacgtgaccggcctgacctccaaggtggtggtggattacaaggcg
accgcgaaatcggccgatctgcgtccgcgcatcgtcatgaaggatgcccgcggcgagatc
atgaagctgccgaacgggaccgaggcgcgctacttcctcaaccccgatacggtgctgagc
gtggatcatggcgcgaccgtggaagcgggcgacgtggtggcccgcatgccgcgcgaatcc
tccaagacgcgtgacatcaccggtggtctgccccgcgtggccgagttgttcgaggcccgc
cgtccgaaggatgccgcgatcatcagcgacatcgatggccgcgtggaattcggcaaggat
tacaaggccaagcgccgcgtgatcgtcaagagcgagccgatgggcgatgagccgccgctc
gagcgtgaatacctcgtgccgaagggcaagcacgtctcggtgcaggaaggcgactatgtg
aaggccggtgacccgctggtggacggcccgcgcgtgccgcatgacatcctgcgcgtgctg
ggtgtggaggcgctcgccaactacctggtgaacgagatccaggacgtctatcgactccag
ggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtc
gagatcctcgagccgggcgacaccacctacctgatcggcgagcaggtggaccgcttcgag
ttcgatgcggagaatgagaagcgcctgcgtgtgggcgaacgccctgcacgggcggagccg
gtgctccagggcatcaccaaggcttcgctgcagacgcagagcttcatctcggcggcctcc
ttccaggagacgacacgcgtgctcaccgaggcggccacggccggcaaggtggatacgctg
ggcggcctgaaggagaacgtcatcgtgggccgcctgatcccggccggcacgggttccgtg
atgaaccgcctgaaggttctggcggcgcgtcgggacagcgggcgcctgcccgccgtgccc
gcgctggccgagccggagacgagccccgcggccgccgaatag
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integrated database retrieval system
