Sediminicoccus rosea: LHU95_18670
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Entry
LHU95_18670 CDS
T08103
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srf
Sediminicoccus rosea
Pathway
srf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHU95_18670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srf03019
]
LHU95_18670
Enzymes [BR:
srf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHU95_18670
Messenger RNA biogenesis [BR:
srf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHU95_18670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UPY36219
LinkDB
All DBs
Position
complement(3933517..3934884)
Genome browser
AA seq
455 aa
AA seq
DB search
MTTFNELGLNPLLLSALEQAGYTTPTPIQSQAIPAALQGRDILGIAQTGTGKTAAFALPI
LHQLALTGGHPPRGGCRVLVLSPTRELASQIAESFKTYGRHMGFSVATVFGGVGHVPQQR
ALARGVDVLVATPGRLMDHMGTKHARLDHTQILVLDEADQMLDQGFLPAIRKIVAQVPKV
RRTMFFSATMPPDIARLAADMLIEPVRVEVTPVSTTAERVNQKVIFLDGSGKRAALTGIL
RGEGVGRVLIFSRTKHGADKIVKSLADDGIAANAIHGNKGQSQRERALAEFKSGRAPVLV
ATDIAARGIDVPEVTHVIQHELPEVPETYVHRIGRTARAGASGMAIALVAPDEVGLLRAI
EKLTRQKIDSEDRRQNPTVPLNDRAVPTRPQRGRQAPQQNRAPKREEHRGAREEHRGSPS
RPSEQRSYVKPISDAGRKRPSAPSSAPRGFMARGR
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaccactttcaacgaactcggcctcaatccgctcctgctgagcgccctcgaacaggcc
ggctacaccacgcccaccccgatccagagccaggccatcccggccgcactccagggccgt
gacatcctgggcatcgcgcagaccggcaccggcaagaccgccgccttcgccctgcccatc
ctgcaccagctggcgctcaccggcggccacccgccgcgcggcggctgccgcgttctggtg
ctgagcccgacgcgcgaactggcttcgcagatcgcggaaagcttcaagacctatggccgc
cacatgggcttctcggtcgctaccgtctttggcggcgtcggccatgtgccgcagcagcgg
gccctggcccgcggcgtggacgtgctggtggccacgccgggccgcctgatggaccatatg
ggcaccaagcatgcccgcctggaccacacccagatcctggtgctggacgaagccgaccag
atgctcgaccagggcttcctgccggccatccgcaagatcgtggcgcaggtgcccaaggtg
cggcgcacgatgttcttcagcgcgaccatgccgccggatatcgcgcgcctggccgccgac
atgctgatcgagcccgttcgcgtcgaagtgacgcctgtttccaccaccgccgagcgcgtg
aaccagaaggtcatcttcctcgatggctcgggcaagcgcgccgccctgaccggcattctg
cgcggtgagggtgtgggccgcgtcctcatcttctcccgcaccaagcatggcgcggacaag
atcgtgaagtcgctggccgatgacggcatcgccgccaatgccatccatggcaataagggc
cagtcccagcgcgagcgcgcgctcgccgagttcaagtccggccgcgcgccggtgctggtc
gcgaccgacatcgccgcccgcggcattgacgtgccggaggtgacgcacgtcatccagcac
gagctgccggaagtgccggagacctatgtccatcgcatcggccgcaccgcgcgcgccggc
gcttcgggcatggccatcgcgctcgttgccccggacgaagtcggcctgctgcgcgccatc
gaaaagctgacgcgccagaagatcgacagcgaagaccgccgccagaacccgacggtgccg
ctgaacgaccgcgccgtgccgacacgcccgcagcgcggccgccaggccccgcagcagaac
cgggcgccgaagcgcgaagagcatcgcggcgcccgcgaggaacaccgcggttcgcccagc
cggccgtccgagcaacgctcctacgtgaagccgatcagcgatgcggggcgcaagcggccc
agcgcgccgtcctcggcgccgcgcgggttcatggcgcgcgggcgttaa
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