Sediminicoccus rosea: LHU95_21120
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Entry
LHU95_21120 CDS
T08103
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srf
Sediminicoccus rosea
Pathway
srf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHU95_21120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srf03019
]
LHU95_21120
03009 Ribosome biogenesis [BR:
srf03009
]
LHU95_21120
Enzymes [BR:
srf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHU95_21120
Messenger RNA biogenesis [BR:
srf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHU95_21120
Ribosome biogenesis [BR:
srf03009
]
Prokaryotic type
rRNA helicases
LHU95_21120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
UPY36697
LinkDB
All DBs
Position
complement(4422222..4423937)
Genome browser
AA seq
571 aa
AA seq
DB search
MPFPDLAGPLATTLAERGYAEPTAVQAAVLNPETTGRDLLVSAQTGSGKTVAYGLAISGD
VLAGAERLGHSATPLALIVAPTRELALQVQVELTWLYAKAGGRIVACVGGMDPITERRQL
AHGAHIVVGTPGRLRDHLERGNLKPQTIRAVVLDEADEMLDLGFREDLEAILETMPAERR
TLLFSATVPRGIAQLAKGFQKDALRIAAANEGTQHSDIEYRALSVAPGEMERSVVNTLRF
FDPRTALVFCTTRAAVARLHGNLVERGFSAVALSGELSQAERTRAMQGLRDGRARVCVAT
DVAARGIDVPDLALVIHADLPNDPETLLHRSGRTGRGGKKGISALIVPHNKRRLAERLLM
AAKLKAAWSGAPTAAEIHAKDGERILATGIEMLDAEADETDMSLGRRLLEGRSPEAVAAA
LVKQLRAPLPAPEELAAAEARPAPQPRTMPAPTEVGEGVWFRMNVGRSHDADPRWILPFL
CHRGHVTREEIGRIRILDRETRFEVAPYAASRFAHAAAKPGRDDAHIKVEAAEAPGAHES
APRRSGPYVPPAGGAPKRPYAGNKRAAPRRP
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcccttccccgaccttgctggccccttggccaccacccttgccgaacgcggctatgcc
gagccgaccgccgtccaggccgccgtcctcaacccggagacgaccggacgcgacttgctc
gtctcggcgcagaccggatcgggcaagacggtcgcctatgggctcgccatctcgggtgat
gtgctggccggggcggagcgcctgggtcactccgccacccccctggcgctgatcgtcgca
cccacgcgggaattggcgctgcaggttcaggtcgaactcacctggctctatgccaaggcc
ggcgggcgcatcgttgcctgcgtcggcggcatggacccgataaccgagcgccggcaactg
gcccatggcgcccacatcgttgtcggcacgcccgggcgcctgcgggatcatctggagcgc
ggcaacctcaagccgcagaccatccgcgccgtggtcctggatgaggcggatgagatgctc
gacctcggcttccgcgaggatctggaagccatcctggagaccatgccggccgagcgccgc
acgctgctcttctcggccaccgtgccgcgcggcatcgcgcagctggccaagggtttccag
aaggatgcgctgcgcatcgccgccgccaatgagggcacgcagcacagcgacatcgaatac
cgcgcactctccgtggcgccaggcgagatggagcgctctgtcgtcaacacgctgcgcttc
ttcgacccgcgcaccgcgctggtcttctgcaccacgcgtgccgccgtggcgcggctgcat
ggcaatctggtggagcgcggcttctcggccgtggccctctccggcgaactctcccaggcc
gagcgcacgcgggccatgcaggggctgcgcgatggccgcgcgcgggtctgcgtggcgacc
gatgtggcggcgcgcggcattgacgtgcccgacctcgcgctggtgatccacgccgacctg
cccaatgaccccgagacgctgctgcaccgctcgggccgcaccggccgcgggggcaagaag
ggcatctccgcgctgattgtcccgcacaacaagcgccgcctggccgagcgcctgctgatg
gcggccaagctcaaggccgcctggtccggcgcgcccaccgccgccgagatccacgccaag
gatggcgagcggattctggccaccgggatcgagatgctcgatgccgaggccgatgagacc
gacatgtcgctgggccgccgcctgctggaaggccgctcgcccgaagccgtcgccgccgcc
ttggtgaagcagctgcgcgcccccctgccggcgcccgaggaactcgccgcagccgaagcg
cggcccgcgccgcagccacgcaccatgcccgcaccgaccgaggtgggcgaaggcgtctgg
ttccgcatgaatgtgggccgcagccatgacgccgatccgcgctggatcctgcccttcctc
tgccatcgcggccatgtgacgcgtgaggagatcggccgcatccgcatcctggaccgcgag
acgcgcttcgaagtggcgccctatgccgccagccgctttgcccatgcggccgccaagccc
gggcgtgacgacgcccatatcaaggtggaggccgccgaggcgcctggcgcgcatgagagc
gcgccgcggcgcagcggcccctatgtcccgccggcgggtggcgcgcccaagcgcccctat
gccggcaacaagcgtgccgcgccccgccggccgtga
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