Candidate division SR1 bacterium Aalborg_AAW-1: XF24_00356
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Entry
XF24_00356 CDS
T04487
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srg
Candidate division SR1 bacterium Aalborg_AAW-1
Pathway
srg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XF24_00356 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srg03021
]
XF24_00356 (rpoC)
03400 DNA repair and recombination proteins [BR:
srg03400
]
XF24_00356 (rpoC)
Enzymes [BR:
srg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XF24_00356 (rpoC)
Transcription machinery [BR:
srg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XF24_00356 (rpoC)
DNA repair and recombination proteins [BR:
srg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XF24_00356 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKH32697
LinkDB
All DBs
Position
complement(374808..378662)
Genome browser
AA seq
1284 aa
AA seq
DB search
MQKQSFDGLVVKLASAQTIEKRSHGIVDHADTVNYRTGKPKHKGLFCESIFGPIRNFECS
CGKYKGVRYKAVVCERCGVEVTNARVRRERMGHIDLATPVIHVWYQNSVSGGIHHLLGLS
GNEIQKILGFVKYIVTSHVTDEQRENMFKNLEENVKSTLERIDESYLSEKEQIATNAKAS
KNALQDLENRYVANKAEIELEFNRIKGIISTLDRGVTILESDYRNIFSQFEDQVSFYSGP
LAIYNMLKGLDIKQEIDKNLKEFSSIKSVEKRKKTFILIKLLINLYSSGVEPENMVITKL
PVIPPDLRPVVQLDGGRFATSDVNLFYRRVLMRNIRLKKMIQVGMPDVVKKNEIRLLQEA
VNNLFVGEKQATGGGSGTKVSKSLSDMLSGKEGIFRRNLLGKRVDYSGRSVITVGPNLKL
DECGIPLYIAMRIFSPFVIGKLIAKKIAYTPKQAEKMIKEGHPLALKYLEEVVKDKYVLL
NRAPTLHRLSIEAFKVKLMPGKTIRLHPLVCTSFNADFDGDQMAVHLPISQEAQDEAKNL
IAADKNVLKPTDGEPAIVHSQDMVHGIYYLTDDRIHAGSFVGYYHSMKSVIQAYESKSIQ
LKDKVIVLFQDETIETTVGRVIFNSVLPEKNPFINETVHKKKLHKLLNNIFDEYGQETAV
KVADAIKDLGFNYATYSGLSISAVGIEIPQEKEALLKLGDDKVNEVYKYYYKGFLSDDEK
HRQIVQIWTDIKNKLEKHAKELLIDKGDDVFAMIDSGARGSYNNSTQILGMKGLVMNQTG
RIIELPIKGNFVEGLSPIEYFISSHTARKGKADTALRTADSGYLTRKLCDSSQEVVVKDT
DCGTEDSLIISKMEVESYNGDFEETLYGRVLASDIHDAYGNTILHAGDMIDKKKLALILE
SDVDVVNLRSPMICKTVSGVCQKCYGMDLATREIVRLGTPVGIIAAQSIGEPSTQLTMDT
FHKGGVVSAGEDMAQGIDRVKQLFEVRKPKTSAIIAPFDGIVRFTEKGKMRFMSLESQFE
KETLLFKDGYEVTVKKGTSLVKGSIYAVKGASKMKVKDDGMVLEVHKDHIVFGTKKLVEY
SLIGLNPLGINEGDEVFKGQILTSGAVDIKEYQDIVGDIEAMKYMLREVNAVYGVQGQAI
NDKHIEIIIKQLFSKVFIYDAGDSSLIPGSHAKYEDVVSINKELVSAGKRQCVFKRMVLG
LTSIAKETDSWLSSASFQETIRVMVDASLKGAVDDLSDLKSNVIIGRLLPIGQEFIDRQE
KSAFDLSMTQDNTTIVEESEEVVS
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacaatcatttgatggtttagtagtaaagcttgcatcagctcagaccatagaa
aaacgatcacatggtatagtagatcatgctgacacagtaaactatagaacaggaaaacca
aaacataaaggattattctgtgaatctatttttggacctattagaaattttgagtgtagc
tgtggaaaatataaaggagtaagatataaagcagtggtatgtgaaagatgtggagtagaa
gttacaaatgcgagagtgagaagagaaagaatgggtcatattgatcttgctacaccagtc
attcatgtatggtatcaaaatagtgtatcaggaggtattcatcatttacttggactatct
ggaaatgaaatccagaaaattcttggatttgtaaaatatattgtgacttcacatgtgacc
gatgaacagagagaaaatatgtttaaaaatcttgaagagaatgtgaaatcaactctagaa
agaattgatgaatcttatttgtcagaaaaagagcaaatagctacaaatgcaaaagcatca
aaaaatgctcttcaagatcttgaaaatagatatgtagcaaataaagcagaaattgagctc
gaatttaatagaattaaaggtattatatctacgcttgatcgtggtgttactattttggaa
agtgactatagaaatattttttctcaatttgaagatcaagtatcattttattcatgacca
ttagctatttataatatgcttaaaggtttggatattaaacaagaaattgataaaaatctt
aaagaattttcttcaattaagtctgttgaaaagagaaaaaaaacattcattttgattaaa
ttattaattaacctttattcttctggagtagaaccagaaaatatggtaattacaaaactt
cctgttattccaccggatttgagaccagtggttcagcttgatggaggtagatttgctact
tctgatgttaatcttttttatcgtcgtgttttgatgagaaacatcagattgaaaaaaatg
atccaagttggtatgcctgatgtcgtgaagaagaatgaaattagacttttacaagaagca
gttaataatctttttgtaggagaaaaacaagcaacaggatgaggttctggtactaaggta
tctaaatctttgtcagatatgctttcaggtaaagaaggaatttttagaagaaatcttctt
ggtaaaagagttgattattctggaagatcagtaattactgtttgacctaatcttaaactt
gatgaatgtggtataccattgtatatcgctatgagaatattctctccatttgtgatagga
aaacttattgctaaaaaaatagcatatacaccaaaacaagctgaaaaaatgattaaagaa
tgacatcctcttgctttgaagtatcttgaagaagtagtgaaagataaatatgtattattg
aatcgtgctcctacacttcatagactttctattgaggcatttaaggtaaaacttatgcca
ggtaaaactattagacttcatcctcttgtatgtacttcatttaatgctgatttcgatgga
gatcaaatggcagtacatcttccaatctctcaggaagctcaagatgaagctaaaaacttg
atagcagcagacaagaatgttttgaaaccaacagatggtgaaccagctattgtgcactca
caagatatggtacatggtatttattatcttactgatgatagaattcatgcatgatctttt
gtaggttactatcattctatgaaatcagtaatccaagcttatgaatccaaatctattcaa
ctcaaagataaagtcatcgttttattccaagatgagactattgaaactactgttggaaga
gtaatctttaatagtgttttaccagaaaaaaatccgtttattaacgaaactgttcataaa
aagaagctacataaattgcttaataatatctttgatgaatatggtcaagaaacagcagta
aaagttgcagatgcaattaaagatttgtgatttaattatgcaacgtattcatgactttct
attagtgcagtaggtattgaaattcctcaagaaaaagaagcattattaaaattgtgagat
gataaagtaaatgaagtctacaaatactactataaatgattcttgagcgatgatgaaaaa
catagacaaattgtacaaatctggactgatataaaaaataaattagaaaaacatgccaaa
gaacttcttatcgataaaggtgatgatgtatttgctatgattgattcatgagcaagatga
tcatataataactctacccaaattcttggtatgaaatgattagtaatgaaccaaacaggt
agaattattgaacttcctattaagggtaatttcgtagaaggactttctcctattgaatac
tttatctcgtcacatactgctcgtaaaggtaaagctgatacagctcttagaacagctgat
tcttgatatttgactagaaaattgtgtgattcttctcaagaagtcgtggttaaagataca
gattgtggaacagaagattctttaatcatttctaaaatggaagtagaatcatataatggt
gatttcgaagaaacattatatggtagagtattggcttcagatatacatgatgcttatgga
aatactatattgcatgctggtgatatgattgataagaaaaaacttgctctgatcttagaa
agtgatgtggatgttgttaatcttagatctcctatgatttgtaaaactgtctcaggtgta
tgtcaaaaatgttatggtatggatctggcaaccagagagatcgtaagattatgaacgcca
gtaggaatcatagctgctcaatctattggagaaccatctacacaattgactatggatacc
ttccataaatgatgagtagtgtctgctggagaagatatggctcaaggtattgatagagtg
aaacaattgtttgaagtaagaaaacctaaaacttctgctattatagctccatttgatggt
atagttcgctttactgagaaaggtaaaatgagattcatgtctctagaatcgcaatttgaa
aaggaaaccttactcttcaaagatggttatgaagttactgttaagaaaggtacatctctt
gtaaaaggatctatttatgcagtgaaaggagcaagtaagatgaaagtgaaagatgatgga
atggtcttagaagtacataaagatcatattgtgtttggtacaaagaaacttgttgaatat
tctcttatagggttaaatccattgggaattaatgaatgagatgaagtatttaagggacaa
attttaacttctggagctgtagatatcaaagaatatcaagatattgtaggtgatatcgaa
gcaatgaaatatatgttaagagaggtaaatgctgtctatggagtacaaggacaagcgatc
aatgataaacatattgagattatcataaaacaattgttctctaaagtatttatctatgat
gcaggagattctagtcttattcctggttctcatgctaaatatgaagatgttgtgtctatt
aataaagaacttgtgtctgctggtaagagacaatgtgtctttaagagaatggttctttga
cttacatctattgcgaaagagacagattcatggctttcatcagcatctttccaagaaact
attagagttatggttgatgcatctcttaagggtgcggtagatgacttgagtgatctgaaa
tcaaacgtgattattggaagacttcttcctattggacaagaatttattgatcgtcaagaa
aagagtgcttttgatctttctatgacacaggataatactactattgtagaagaaagtgaa
gaggttgtttcataa
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integrated database retrieval system
