Candidate division SR1 bacterium Aalborg_AAW-1: XF24_00954
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Entry
XF24_00954 CDS
T04487
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srg
Candidate division SR1 bacterium Aalborg_AAW-1
Pathway
srg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XF24_00954 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srg03019
]
XF24_00954 (rhlE)
Enzymes [BR:
srg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XF24_00954 (rhlE)
Messenger RNA biogenesis [BR:
srg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XF24_00954 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AKH33277
UniProt:
A0A288GUN2
LinkDB
All DBs
Position
complement(975199..976437)
Genome browser
AA seq
412 aa
AA seq
DB search
MTLFSDLGLDKKFLDALDGLGYTTPSPIQEQAIPHILEGKDVFGCAQTGTGKTAAFSLPL
LQLLDQEVYQTTLPKKKYKRPPIRALILTPTRELAIQIGESINDYAQYTNLTNTVIYGGV
SQNPQIKQLRKGVDILVATPGRLLDLVNQNFIRLSDIQIFVLDEADRMLDMGFIHDIKTI
IGHLPRKQRQSLFFSATVAPKVVELSKGMLNDPIHITVTPASSTVDTITQSLYTVRFEDK
KNLLLHLLENSEIKNAVVFTKTKHGANKVEKILAQAKIPSAAIHGNKSQSARQHALSRLK
SGEIRVLVATDVAARGIDIDELSHVIIYDVPLEPESYVHRIGRTGRAGLAGQSIMFCDAS
EIPQCRQIVKLIGKEIPLETNHPFHTELTHYIPVKKSSSTPKKKKKYYPRKR
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgacattattttccgacctctgattagataagaagtttctcgacgcattagactgactc
tgatataccacaccaagtcctatccaagagcaagctatacctcatattctcgaaggtaaa
gatgtcttctgatgtgctcagactggtactggtaagactgctgctttctctctaccgctt
cttcaactcctcgatcaagaagtctatcaaaccaccctaccaaagaaaaaatacaaacgt
cctccaattcgtgctcttatccttactcccactagagaacttgctatccaaatcggtgaa
agtatcaatgattatgcacaatatacgaatcttaccaataccgttatctacggtggagta
tctcaaaaccctcagattaaacaattgcgtaaatgagttgatatcctcgtcgcaacacca
ggaagattactcgatttagtcaatcagaacttcataagactgtcagatatccaaattttt
gtcctcgatgaagctgatcgtatgctcgatatgtgatttattcatgatataaaaacaata
atctgacatcttccacgtaaacagagacaatcattgttcttctcagctaccgtagctcca
aaagtagtagaactctccaaatgaatgctaaatgatcctatccatattaccgtaactcca
gcttcttccactgtcgatacgattactcaatcgttgtataccgttcgttttgaagataaa
aaaaatcttctcttacatcttcttgaaaactcagaaatcaagaatgccgtagtctttacg
aagaccaaacatggagctaacaaagtagaaaaaatccttgctcaagcaaaaataccaagt
gctgccatccatggaaacaagtcacaatctgctagacaacatgcgctttctcgtctaaaa
tctggagaaattcgtgtattggtcgctactgatgtagcagcgagaggtatcgatatcgat
gaactgagccacgtgatcatctatgatgtaccactcgaaccagagagttatgtccatcgt
atcggtcgtacgggaagagctggacttgctggtcagtcgattatgttttgtgatgccagc
gagattcctcaatgcagacaaatcgtgaaactcatcggtaaagaaatacctctcgagacc
aatcaccctttccatactgaacttacgcattatatccctgttaaaaaatcttcatccact
cctaagaaaaagaaaaaatattatccgagaaagaggtaa
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