Stenotrophomonas rhizophila: BAY15_0008
Help
Entry
BAY15_0008 CDS
T04500
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03030
DNA replication
srh03410
Base excision repair
srh03420
Nucleotide excision repair
srh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAY15_0008
03410 Base excision repair
BAY15_0008
03420 Nucleotide excision repair
BAY15_0008
03440 Homologous recombination
BAY15_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srh03032
]
BAY15_0008
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_0008
Enzymes [BR:
srh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BAY15_0008
DNA replication proteins [BR:
srh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BAY15_0008
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BAY15_0008
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAY15_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AOA70442
LinkDB
All DBs
Position
complement(6905..9676)
Genome browser
AA seq
923 aa
AA seq
DB search
MSRLVLIDGSSYLYRAFHALPPLTNAAGEPTGALFGVVNMLRATLKERPEYVAFVVDAPG
KTFRDDLYADYKANRPPMPDDLRPQIEPMCQIVEALGLTILRIPGVEADDVIGTLALQGH
RDGMTVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDATVMDKFGVRADQIVDLLALMGD
AVDNVPGVEKCGPKTAAKWLAEYQTLDGVMAAAPGMKGKIGENLRAALERLPLNRELVTI
RTDVPLEASPQTLALRDPDVPALGELYLRYGFTQALKELGGPVPAPAAASDAPVSLRGTA
AGYARGAASEPAPALDAALSAPGEYETVLTTEQLQAWVARAEAAELIAFDTETDALDAMR
ANLVGISLAVEPGRAAYIPVGHDYPGAPAQLPRQQVLDALRPVLENPDKKKLGQHGKYDL
HVLRRHGVDVKGYHDDTMLESFVLNSTATRHDMDSLAMRYLGYTTIKFEDVAGKGAKQIP
FSQVGLDEASRYAAEDADITLRLHRVLHPQLLESAALDNVYRSIEMPLVPVLARIEANGV
YIDSAELRRQSQDLGARMLAAQQKATELAGRTFSLDSPKQLQAVLFDELKLPALVKTPKG
QPSTNEEALEAIAEQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAA
TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGHKLLACDYSQIELRIMAHLSEDPGLVR
AFEQGVDVHRATAAEVFSRALDEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQ
DYVALYFSRYPGVRDFMERMRQQARDQGYVETIEGRRLYLNDIHARNQGLRAGAERAAIN
APMQGTAADIIKRAMVKVDDWLQGQGGRARMILQVHDELVFETESEFLETLRTQVVELMS
SSAQLRVPLVVDAGVGDNWDEAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagccgattagtcctgattgacgggtccagttacctgtatcgcgcgttccacgcgctt
ccgccgctgaccaacgcggccggtgaacccaccggcgcgctgttcggtgtggtcaacatg
ctgcgcgccaccttgaaggagcgtcccgagtacgtggccttcgtggtcgacgcaccgggc
aagaccttccgtgacgacctgtacgccgactacaaggccaaccggccgccgatgcccgac
gacctgcgcccgcagatcgagccgatgtgccagatcgtcgaggcgctgggcctgaccatc
ctgcgcattccgggcgtggaagccgacgatgtgatcggcacgctggcgctgcagggccac
cgcgacgggatgaccgtcaccatttccaccggcgacaaggacttcgcccagctggtccgc
ccgggcatcgaactggtcaacaccatgacgggcagccgcatggattcggacgctaccgtg
atggacaagttcggcgtgcgcgccgaccagatcgtcgacctgctggcgttgatgggcgac
gccgtggacaacgtgcccggcgtggagaagtgcggccccaagacggccgccaagtggctg
gccgagtaccagaccctggacggggtgatggccgccgcgcctggcatgaagggcaagatc
ggcgaaaacctgcgcgcggcgctggaacgcctgccgctcaatcgcgaactggtcaccatc
cgcaccgacgtgccgctggaggcctccccgcagaccctggcgctgcgcgacccggacgtg
ccggcactgggcgagctctacctgcgctacggcttcacccaggcgctgaaggagctgggt
ggcccggtcccggcccctgcggcggccagcgacgcgccggtgagcctgcgcggcaccgcc
gctggctacgcgcgcggcgcggccagcgagccggccccggccctggatgcggccctgtcg
gccccgggcgaatacgaaaccgtgctcaccaccgaacagctgcaggcctgggtggcccgc
gccgaggcggccgagctgatcgccttcgacaccgagaccgacgcgctcgatgccatgcgc
gccaaccttgtcggcatcagcctggcggtcgagccgggccgtgcggcctatattccggtc
ggccatgactaccccggcgctcctgcccagctgccgcgccagcaggtgctggacgcgctg
cgcccggtgctggagaaccccgacaagaagaagcttggccagcacggcaagtacgacctg
cacgtgctgcgccggcacggcgtggacgtgaaggggtaccacgacgacaccatgctcgaa
agcttcgtgctcaattccaccgccacccgccacgacatggattcgctggcgatgcgctac
ctcggctacaccacgatcaagttcgaggacgtcgccggcaagggagccaagcagattccg
ttctcccaggtggggctggacgaagccagccgctacgcggccgaagatgccgacatcacc
ctgcgcctgcaccgcgtgctgcacccgcagctgctggaatcggccgcgctggacaacgtg
taccgcagcatcgagatgccgctggtgccggtgctggcccggatcgaagccaacggcgtg
tacatcgacagcgccgagctgcgccggcagagccaggacctgggcgcgcgcatgctggcc
gcccagcagaaggccaccgaactggccgggcgcaccttcagcctggactcgcccaagcag
ctgcaggcggtgctgttcgacgagctgaagctgcccgcgctggtgaagacccccaaaggc
cagcccagcaccaacgaagaggcgctggaggcgatcgccgaacagcacgagctgccgcgg
gtgatcctggagtaccgcgggctggccaagctgcgcagcacctacaccgacaagctgccg
gagatggtcaaccccgacaccggccgggtccacaccagttaccaccagtccggcgcggcc
accggccggctgtcctcgtcggacccgaacctgcagaacatcccgatccgcaccgaggac
ggccgccgcatccgccgcgccttcgtggccccgccggggcacaagctgctggcctgcgat
tactcgcagatcgagctgcggatcatggcccacctgtccgaggatccgggcttggtgcgc
gcgttcgaacagggcgtcgatgtgcaccgtgccacggcggccgaggtattcagccgcgcg
ctggacgaggtcaccccgaacgagcgccgcgccgccaaggccatcaacttcggcctgatg
tacggcatgagcgcgttcgggctggcccgtaacctgggcatcgaccggggccaggcgcag
gattacgtggcgctgtatttcagccgctacccgggcgtgcgcgacttcatggagcgcatg
cgccagcaggcccgcgaccaggggtatgtggaaaccatcgaaggccgccggctgtatctg
aacgatattcacgcgcgcaaccagggcctgcgcgccggcgccgagcgcgcggcgatcaat
gcacccatgcagggcaccgccgcggacatcatcaaacgggccatggtgaaggtggacgac
tggctgcagggccagggcggccgcgcccggatgattctgcaggtgcacgatgaactggta
ttcgaaaccgaaagcgagtttctggaaaccttgcgcacgcaggtggtcgagcttatgtcg
tcttcagctcaattacgcgtcccgctggtggtggatgccggggtcggggataactgggat
gaggcgcattga
DBGET
integrated database retrieval system
