Stenotrophomonas rhizophila: BAY15_0016
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Entry
BAY15_0016 CDS
T04500
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03420
Nucleotide excision repair
srh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAY15_0016
03430 Mismatch repair
BAY15_0016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_0016
Enzymes [BR:
srh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAY15_0016
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAY15_0016
MMR (mismatch excision repair)
Other MMR factors
BAY15_0016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
CTNNBL
Motif
Other DBs
NCBI-ProteinID:
AOA70450
LinkDB
All DBs
Position
complement(13695..15887)
Genome browser
AA seq
730 aa
AA seq
DB search
MDVSHLLDGLNPAQREAVSAPPGHHLVLAGAGSGKTRVLIHRIAWLNEVCGVPMHGIFAV
TFTNKAAGEMRHRIDVQLPQGSRGAWIGTFHGLAHRLLRLHYQEAKLPDSFQVLDSDDQL
RLVKRVVQQLEIDDSKHPPKQIAWWINEQKDEGRRPQHIQPEPNDAWLETMRQAYAAYQE
RCDRAGLVDFAELLLRAHELLRDNPALLAHYRSRFREILVDEFQDTNAIQYAFVRVLAGD
SGHVFVVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAH
NPDRIGKELWTDSGDGDPIDLYAAYNEMDEARYVVERARQWVRDGGSYGDAAVLYRSNAQ
SRAFEEALLSEQVPYRVYGGMRFFERAEIKDALAYLRLMTNRNDDAAFERAVNTPTRGIG
DRTLDEVRRLARHQAISLWEATMLTTQGNELAARARNALAGFLSLVNQLHHEAGEMTLAE
RIDHVLIRSGLREHWSKESRNALDSESRADNLDELVSVASRFTRREDDVEEGAENMSELV
AFLSYASLEAGEGQAQAGEEGVQLMTLHSAKGLEFPLVFLAGMEDGLFPSARSLEESGRL
EEERRLAYVGITRARQKLVLSYAESRRIHGQENYNVPSRFLREIPRELLNEVRPKVQVSR
GASLGASRPAGHAAMEAPPLKLGAMVTHAKFGEGMVTDYEGSGAHARVQVEFAEAGSKWL
VMAYANLTVI
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcccacctgctcgacgggctcaaccccgctcagcgcgaagctgtgtccgcc
ccgcccggccaccatctggtgcttgccggtgccggttccggcaagacccgcgtactgatc
caccgcatcgcctggctcaacgaagtctgcggcgtgcccatgcacggcattttcgcggtg
accttcaccaacaaggccgccggcgaaatgcgccaccgcatcgacgtgcagctgccgcag
ggcagccgtggcgcgtggatcggcaccttccacggcctggcccatcgcctgctgcgcctg
cactaccaggaggccaagctgcccgacagcttccaggtgctggattcggacgaccagctg
cggctggtcaagcgcgtggtgcagcagctggaaatcgacgacagcaagcatccgcccaag
cagatcgcctggtggatcaacgagcagaaggacgaaggccgccgcccgcagcacatccag
cccgagccgaacgatgcctggctggaaaccatgcgccaggcctacgcggcctatcaggaa
cgctgcgaccgcgccggactggtcgactttgccgagctgctgctgcgcgcgcacgaactg
ctgcgcgacaacccggcgctgctggcccactaccgctcgcgtttccgcgagatcctggtg
gacgagttccaggacaccaacgccatccagtatgccttcgtgcgcgtgctggccggcgac
agcggccacgtgttcgtggtcggcgacgacgaccaggccatctacggctggcgcggcgcc
aaggtcgagaacgtacagcgcttcctgaaggatttcccgggcgcgcagaccgtacgcctg
gagcagaactaccgctccagcgccaacatcctgggcgcggccaatgcggtgatcgcgcac
aacccggaccggatcggcaaggagctgtggaccgacagcggcgatggcgaccccatcgac
ctgtacgcggcctacaacgaaatggacgaggcgcgttacgtggtcgagcgcgcacgccag
tgggtgcgcgacggcggcagttacggcgacgccgccgtgctctaccgcagcaacgcgcag
tcgcgggcctttgaagaagcgctgctctccgagcaggtgccgtaccgtgtgtacggcggc
atgcgcttcttcgagcgtgcggaaatcaaggatgcgctggcgtacctgcggctgatgacc
aaccgcaacgacgacgccgccttcgagcgcgcggtcaacacgcccacgcgtggcatcggc
gaccgcaccctggatgaagtgcgccggttggcgcgccaccaggcgatctcgctttgggaa
gccacgatgctgaccacccagggcaacgagctggccgcccgcgcgcgcaacgcgctggct
ggtttcctcagcctggtgaaccagctgcaccatgaagccggtgagatgacgctggccgaa
cgcatcgaccatgtgctgatccgttccggcctgcgcgaacactggtcgaaggaaagccgc
aacgcgctggattcggaatcgcgcgcggacaacctggacgaactggtctcggtggcctcg
cgcttcacccggcgcgaggacgacgtcgaggaaggcgcggaaaacatgagtgagctggtc
gccttcctgtcctacgcctcgctggaagccggcgaaggccaggcccaggcgggcgaagag
ggggtgcagctgatgaccctgcattcggccaagggcctggaattcccgctggtgttcctg
gccggcatggaagacggcctgttccccagcgcgcgttcgctggaagaaagcggccggttg
gaagaggagcgccgcctggcgtacgtgggcatcacccgcgcgcgccagaagctggtgctc
agctacgccgaatcgcgccgcatccacggccaggaaaactacaacgtgccttcgcgcttc
ctgcgcgagatcccacgtgagctgctcaacgaagtgcgccccaaggtgcaggtctcgcgg
ggcgcctcgctcggcgccagccgcccggccggccacgccgcgatggaagcgccgccgctc
aagctgggcgcgatggtcacccatgcaaagttcggcgagggcatggtcaccgactacgaa
ggcagcggcgcgcacgcgcgcgtgcaggtagagttcgccgaggccggcagcaagtggctg
gtgatggcgtacgccaacctcaccgtgatctga
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