Stenotrophomonas rhizophila: BAY15_0087
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Entry
BAY15_0087 CDS
T04500
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BAY15_0087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_0087
Enzymes [BR:
srh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BAY15_0087
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BAY15_0087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
UvrD_C_2
AAA_11
Helicase_RecD
UvrD-helicase
AAA_22
SH3_13
UvrD_C
DEAD
SLFN-g3_helicase
nSTAND3
Herpes_Helicase
T2SSE
Mg_chelatase
AAA_28
NACHT
Phageshock_PspD
NTPase_1
AAA_29
AAA_25
SRP54
FtsK_SpoIIIE
ATPase
TrwB_AAD_bind
AAA_24
MeaB
TniB
AAA
KTI12
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AOA70521
UniProt:
A0A1B2MZ91
LinkDB
All DBs
Position
complement(125484..127373)
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AA seq
629 aa
AA seq
DB search
MSLLDALLKQGTLRTLDHALAQSLRRLQPETPDAVLAAAALASLAVAQGHAGVDPAAPRR
LVDAELDWPSPDTWLAQLRASPWVASPDSDDVLAADAPLVLEHGLLYLRRYREYERRLAL
GLQRIAAHSLPAHDPGGLATLFAQLFPQALEGIDHQARAAAVALRHPLVLVTGGPGTGKT
TTIARLLVLLAAQAQQAGAALPRVALAAPTGRAAERMADSLRQALQRLRLVGVASELAEA
MPTTGATLHRLLGVIPDSPRFRHHADNPLPYDIVVVDEASMIDLPLMTKLVEAVASGTRL
VLLGDPDQLPSVEAGDVLSAILQASGDGLGTQADDAAALRPLLAAPALLPVAPPRAFAGR
RVQLQRGYRQSDALDLAPLARAVREGDSATALQLLRGGSLAGVAFHEDQVDPLLQHRHTL
LAHWRGLGEADDPVQALAQAGRLRLLTALREGPQGARGLNERIEAALAGSARPGSGPRYF
HGRLLLITENSYRHRLFNGDIGLCLRSREGAMLAWFPGDSPEQPRAFHPAALPAHESAFA
MTVHKAQGSEFDEVWLQLPRRDNRVLSRELVYTGMTRARQALHVLGSAEVMQAALARHAS
RLSGLAQRLEGRAGPCPAVPAAPAQGELW
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctcgacgcactgctgaagcagggcaccctgcgcacgctcgaccatgcgctg
gcgcagagcctgcgccggctgcagccggagacgccggatgcggtgctggccgccgccgcg
ctggcctcgctggcggtggcgcagggccacgccggcgtcgacccggcagcgccccggcgg
ttggtggatgccgagctggactggccttcgccggacacatggctggcgcagctgcgtgcg
tcgccgtgggtggcatcccccgacagcgacgacgtgctggccgccgatgcaccgctggtg
ctcgaacacggcctgctgtacctgcgccgttaccgcgaatacgaacgccgtttggcactc
ggcctgcagcgcatcgccgcgcattctttgccggcgcacgacccgggcgggctcgccacg
ctgttcgcccagctgttcccgcaggcgctggagggcatcgaccaccaggcgcgcgcggct
gcagtggcgctgcgccatccactggtgctggtcaccggtggccccggtaccggcaagacc
accaccatcgcgcgcctgctggtgctgttggccgcgcaggcgcagcaggccggtgcggcc
ctgccacgggtggcactggccgcccccaccggccgcgccgccgagcgcatggccgacagc
ctgcgccaggcgctgcagcggctgcgcctggtgggtgtcgcgtccgaactggccgaggcc
atgccgaccaccggggcgaccctgcaccggctgctgggcgtcattcccgattcgccacgc
ttccgccaccacgccgacaacccgctgccgtacgacatcgtggtcgtggatgaggcctcg
atgatcgacctgccgctgatgaccaagctggtcgaagcggtggccagcggcacccggctg
gtgctgctgggcgacccggaccagctgccgtcggtggaagccggcgacgtgctcagcgcg
atcctgcaggccagcggcgacggcttgggcacccaggccgatgacgccgccgcgctgcgc
ccgctgctggccgcccctgcgttgctgccggtggccccgccccgcgcgttcgccggtcgc
cgcgtgcagctgcagcgcgggtaccggcagagcgatgcgctggacctggcgccgctggcg
cgcgcggtgcgcgagggcgacagcgctaccgcgctgcagctgctgcgcggcggcagcctg
gccggcgtggcgttccacgaagaccaggtcgacccactgctgcagcaccggcacaccctg
ctggcgcactggcgcgggttgggcgaagccgatgatccggtgcaggcgctggcgcaggcc
ggacggctgcgcctgctcaccgcgctgcgcgaggggccgcagggtgcgcgcgggctgaac
gagcggatcgaagccgccctggccggcagcgcgcgcccgggcagcgggccccgctatttc
catggccggctgctgctgatcaccgaaaacagttaccggcaccgcttgttcaacggcgat
atcggcttgtgcctgcgcagccgcgaaggcgcgatgctggcctggttccccggcgacagc
ccggagcagccacgcgccttccacccggcggcgttgcccgcccatgaaagtgccttcgcc
atgaccgtacacaaggcacagggctcggaattcgatgaggtctggttgcagctgcctcgg
cgcgacaaccgggtgctgtcgcgcgagttggtgtacaccggcatgacccgcgcgcggcag
gcgttgcatgtactgggcagtgcagaggtgatgcaggctgcgttggcgcggcatgccagc
cggttgtccgggctggcgcagcgactggagggtagagccgggccttgcccggctgtacct
gcagcgcccgcccaaggcgaactctggtag
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