Stenotrophomonas rhizophila: BAY15_0088
Help
Entry
BAY15_0088 CDS
T04500
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BAY15_0088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_0088
Enzymes [BR:
srh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BAY15_0088
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BAY15_0088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AOA70522
LinkDB
All DBs
Position
complement(127370..131017)
Genome browser
AA seq
1215 aa
AA seq
DB search
MSRLMLQDDPYLSLPLDGVRLIEASAGTGKTFTLATLFTRLVVEQGYRIGQILAVTFTDA
ATQELRKRIRERLALAAQLLARAPAADDAPEVQLTRYLLQRELALGRETPAALAQRLQTA
ADEIDLASIFTIHGFCTRVLREHALESGHTFDPPTLLPSERELHDQLAADLWRVHANDPA
TVDALTRLWSAPDALARDLSALIKPLPLLPALPQQYLEDPSPALQVAAEALGSAIDAHVD
AAQASIANAFERKLFDGRRARRPSFDKAFAELLAGRAARTWPRGSTSHLGKLLPVALLGF
CKEDQQGHCPASPLFDALQTWWHAADACDQWLRQQALLLLHQLRGQAHARLDELKRVGRV
QTYDDLIDGVAAALEGPHRAALVQQLRAQYAIALVDEFQDTDDRQWGIFQRVFGDSPETR
DAGLAPALFLIGDPKQAIYGFRGGDIHTYLKAKREAEAAPALNRNFRSRPGVLRALQALY
AAAGERAFLEADIAFEPVLPGSTRDDADFLRDGQPAPGLTLRLLRSDDGADFKADPSRQQ
ATDACVAAIHQVLLEGREGRALLRGQPVQPGDIAVLVRRHHEATRIQRALSAVGIPAVAA
GKQSLYATAEARELRVLLLALLQPADEGRLRAALSTVLLGENAAAIDAMERDGDPQRAFQ
TRLLLWRERWLRGGPFAVIADLCAEHAERLLGLLDGERRLTNYLQLGELLQQAAGQALGM
HGLLDWLQVQMAHADQDDEQQLLRLESDARRVQIITLHKSKGLEYPLVFLPFVGIDSGGG
NTDSNCTVYAEGRRELHWKLDKDEAWSAASERSAQEQRAEDARLLYVGLTRAEHALWIAA
GDLAGLAKTRLAPMLSDLEALRAHPDIAVIEGPVEPRPAQLPVQREGELPPVRAITRRVP
HDWWVYSFTQLAHADAGHDTDAVATEAPAPAADEPAGVELPLEVEPPAPGEPQPEIDPRF
MGSRFGNVLHDALENTDFARWADWRAGDPAPGDEAEVLRESLRSEGYADADLDDGVAVLV
PLVGQTLTVQLPEGGALHSVPLHDRRAEIEFHFAMQPTAVPALLQLLHHHGLVPDRRGFG
TRRQLEGLMTGKIDLTYVRDGRWYVLDYKSNRLPGYDAARLAAAMQSSEYDLQALIYTVA
LHRWLRFRLGSHYIQERDLGGIRYLFCRGLEAGRADAPGVHAQRFAPALVEAMDALFAGG
PGKHAELVARARGEA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgagccggctgatgctgcaggacgacccgtacctgtcgctgccgctggacggcgtgcgc
ctgatcgaggccagcgccggcaccggcaaaaccttcaccctggccacgctgttcacccgg
ctggtggtggagcagggttaccgcatcggccagatcctggcggtgaccttcaccgacgcg
gccacccaggaactgcgcaagcgcatccgcgagcgcctggcgctggccgcgcagctgctg
gcgcgcgcaccggccgccgacgacgcacccgaggtgcagctgacccgctacctgctgcag
cgcgaactggcgctgggccgggaaacacccgcagcgctggcccagcgcctgcagaccgcc
gccgatgagatcgacctggcctcgatcttcaccatccatggcttctgcacccgcgtgctg
cgcgagcacgcgctggaaagcgggcataccttcgacccgcccacgctgctgcccagcgaa
cgcgaactgcacgaccagctggcggccgatctgtggcgcgtgcacgccaacgacccggcc
acggtggatgcgttgacccggttgtggtccgcgcccgatgcgctggcgcgcgacctgtcg
gcgctgatcaagccattgccgctgctgcccgcgttgccgcagcagtatctggaggatccc
agccccgcgctgcaggtggccgccgaggcgctcggcagtgcgatcgacgcgcatgtcgac
gccgcccaggccagcatcgccaacgccttcgagcgcaagctcttcgacggtcgccgcgcg
cggaggccgagcttcgacaaagcctttgccgagctgctggccggtcgtgcagcgcgcacc
tggccgcgtggttccacctcgcacctgggcaagctgctgccggtggcgttgctcgggttc
tgcaaggaggaccagcagggccattgcccggcctcgccgctgttcgatgcgctgcagacc
tggtggcacgccgccgatgcctgcgaccagtggctgcggcagcaggcgctgctgctgctg
caccagctgcgcgggcaggcccatgcgcggctggacgaactcaagcgggtcggccgcgtg
cagacctacgatgacctgatcgacggcgtggccgccgcactggagggcccgcaccgcgcg
gcactggtgcagcagctgcgcgcacagtacgccatcgcgctggtggatgagttccaggac
accgacgaccgccagtggggcatcttccagcgcgtgttcggcgattcgcccgaaacccgc
gacgccgggctggcgccggcgctgttcctgatcggcgatcccaaacaggccatctacggg
ttccgcggcggcgatatccacacctacctcaaggccaagcgcgaagcagaggccgcaccg
gcgttgaaccgcaacttccgctcgcgccccggcgtgctgcgcgcgctgcaggcgttgtac
gcagccgcaggcgagcgcgcgttcctggaagcggacatcgccttcgaaccggtgctgccg
ggcagtacccgcgacgatgccgatttcctgcgcgatggccagcccgcacccgggctgacc
ctgcgcctgctgcgcagtgacgatggtgctgacttcaaggcagacccctcgcgccagcag
gccaccgacgcctgcgtggccgcgatccaccaggtgctgctggagggtcgcgaaggccgc
gcgctgctgcgcgggcagccggtacagccaggcgacatcgcagtgctggtgcgccgccac
catgaagccacccgcatccagcgcgcgctgagcgcggtgggcattccggcggtggctgcc
ggcaagcagagcctgtatgcgaccgccgaagcccgcgaactgcgcgtgctgctgctggcc
ctgctgcagccggccgatgaaggccgcctgcgcgcggcgctgtcgaccgtattgctgggc
gaaaacgccgccgccatcgacgcgatggagcgcgacggcgacccgcagcgtgcgttccag
acccggctgctgctgtggcgggaacgctggctgcgcggcgggccgttcgcggtcatcgcc
gacctgtgcgccgaacacgccgagcgcctgctgggcctgctggatggcgaacgccggctc
accaactacctgcagctcggcgagctgctgcagcaggccgcaggccaggcgctgggcatg
cacggcctgctggactggttgcaggtgcagatggcacacgccgaccaggacgatgaacaa
cagctgctgcggctggaatcggatgcgcgccgggtgcagatcatcaccctgcacaagagc
aaggggctggaatacccgctggtgttcctgccgttcgtgggcatcgacagcggtggcggc
aacaccgactccaactgcaccgtgtacgccgaaggtcgccgagagctgcactggaagctg
gacaaggacgaggcctggagcgcggccagcgagcgcagcgctcaggagcaacgcgctgaa
gacgcgcgactgctgtatgtgggcctgacccgcgccgagcatgcgctgtggatcgcggcc
ggcgacctggccgggctggcgaagacgcggctggcgccgatgctgtccgacctggaagcg
ctgcgcgcgcacccggacatcgcggtgatcgaaggcccggtggagccgcgcccggcgcag
ctgccagtgcagcgcgaaggcgagctgccgccggtgcgcgccatcacccggcgggtgccg
cacgactggtgggtgtacagcttcacccagctggcccacgccgacgccggccacgacacc
gacgcggtggccaccgaagcgccggccccggcagccgacgaaccggccggcgtggaactg
ccgcttgaagtggaaccgcccgcgcccggtgagccgcagccggagatcgacccgcgcttc
atgggcagccgcttcggcaacgtgctgcacgatgcactggagaacaccgatttcgcgcgc
tgggcggactggcgcgcgggcgacccggcaccgggcgatgaggccgaggtgctgcgcgaa
tcgctgcgcagcgaaggctacgccgatgccgacctggacgacggcgtggcggtgctggtg
ccgctggtcggccagaccttgaccgtgcagctgcccgaaggcggcgcgctgcacagcgtg
ccgctgcacgaccggcgggccgagatcgagttccacttcgccatgcagcccaccgcggtg
ccggcgctgctgcagctgctgcaccaccacgggctggtgccggaccgccgcggctttggc
acgcgacgccagctcgaggggctgatgaccggcaagatcgacctgacctacgtgcgcgac
ggacgctggtacgtgctcgactacaaatccaaccgcttgcccggctacgacgccgcgcgc
ctggcagccgccatgcaaagcagcgagtacgacctgcaggccctgatctacaccgtggca
ctgcaccgctggctgcgcttccggctgggcagccactacatacaggagcgcgacctgggt
ggcatccgctatctgttctgccgcggcctggaagcgggacgcgcggacgcaccgggcgtg
catgcgcagcgctttgccccggccctggtcgaggcgatggatgcactgttcgcaggcggc
cccgggaagcacgccgaactggtggcacgcgcgcggggtgaggcatga
DBGET
integrated database retrieval system
