Stenotrophomonas rhizophila: BAY15_0507
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Entry
BAY15_0507 CDS
T04500
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BAY15_0507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_0507
Enzymes [BR:
srh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
BAY15_0507
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
BAY15_0507
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AOA70941
LinkDB
All DBs
Position
605895..606770
Genome browser
AA seq
291 aa
AA seq
DB search
MAGSGQPMGRATRYALPVTYQTRVSMRIISFNANGIRSAATKGFLEWFRAQDADVLCIQE
TKAQEDQLTDPMFRPDGHHCFYRDAITKKGYSGVAIYSKREPDQVITSLGWAPFDDEGRY
IEARYGNLSVVSFYIPSGSSGDLRQGFKYEVMEWLRPILAQWLASGRDYVLCGDWNIVRS
ALDIKNWKSNQKNSGCLPPERDWLNGQCVDAGQALDVAGGQGWTDAYRLLHPTGEDYTWW
SNRGAARANNVGWRIDYQFVSPGLRDRLRGCSIYRDERFSDHAPFTVDYAP
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggccggatccggccagccgatgggccgggcaacccggtatgctttgcccgttacgtac
cagacccgggtcagcatgcgcatcatcagtttcaacgccaatggcatccgttccgccgcc
accaagggtttcctcgagtggttccgtgcccaggatgccgacgtgctctgcatccaggag
accaaggcccaggaagaccagctgaccgatcccatgttccgcccggacggccaccactgc
ttctaccgtgacgcgatcaccaagaagggctacagcggcgtggccatctacagcaagcgt
gagcccgaccaggtcatcacctcgctgggctgggccccgttcgacgacgaaggccgctac
atcgaagcccgctacggcaacctcagcgtggtgtccttctatatcccctccggcagctcc
ggcgacctgcgccagggtttcaagtacgaagtgatggagtggctgcgcccgatcctggcc
cagtggctggccagcggccgcgactacgtgctgtgcggggactggaacatcgtccgctcc
gcgctggacatcaagaactggaaatccaaccagaagaactccggctgcctgccgcccgaa
cgcgactggctcaatggccagtgcgtggatgccggccaggcgctggacgtggccggcggc
cagggctggaccgacgcctaccgcctgctgcaccccaccggcgaggattacacctggtgg
agcaaccgcggcgcggcccgcgccaacaacgtcggctggcgcatcgattaccagttcgtc
agccccggcctgcgcgatcgcctgcgtggctgctcgatctaccgcgatgaacgcttctcc
gaccatgccccgttcacggtggactacgccccatga
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