Stenotrophomonas rhizophila: BAY15_1260
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Entry
BAY15_1260 CDS
T04500
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAY15_1260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_1260
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAY15_1260
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BAY15_1260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_23
AAA_16
RsgA_GTPase
AAA_21
AAA_25
nSTAND1
nSTAND3
DnaJ_CXXCXGXG
Viral_helicase1
NACHT
cobW
BTRD1
Motif
Other DBs
NCBI-ProteinID:
AOA71694
LinkDB
All DBs
Position
complement(1416490..1419495)
Genome browser
AA seq
1001 aa
AA seq
DB search
MAMDFIRIRGARTHNLKNIDLDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLSVMEKPDLDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGSP
RCPDHGYPLEAQTVSQMVDHVLTLDPEQRYMLLAPVIRERKGEHAQVFDQLRAQGFVRVR
VDGALHEIDAVPPLALRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGDGMVSVQSLD
VEDAPAHLFSSKYSCPVCDYSLPELEPRLFSFNSPVGACPGCDGLGMAEFFDPSRVVVHP
ELSLSAGAVRGWDRRNAYYFQLIASLAKHYKFDTDAPWQSLSEPVRKAVLYGSGDETITF
TYFTEAGGRTQRKHRFEGIIPNLERRYKETESAAVREELAKYISERNCPECQGQRLNRAA
RNVFVADRALPELVVLPIDEALKFFSGMTLPGWRGEIAGKIVKEIGERLGFLVDVGLDYL
TLERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLG
NTVIVVEHDEDAIRLADYVLDIGPGAGVHGGEIVGQGTLQDILDAPRSLTGQYLSGKRAI
EIPARRHKPNPKMTLHLRGASGNNLKGVDLDIPSGLLTCITGVSGSGKSTLINDTLFSLA
ANEINGSSHPIAPYKDVEGLDLFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRELYAQVP
EARARGYSPGRFSFNVRGGRCEACQGDGLIKVEMHFLPDVYVPCDVCHGKRYNRETLEIL
YKGYNINDVLQMTVEDALKLFEPVPSIARKLETLVDVGLSYIKLGQSATTLSGGEAQRVK
LSKELSRRDTGRTLYILDEPTTGLHFHDIEALLGVLHKLRDEGNTVVVIEHNLDVIKTAD
WIVDLGPEGGHRGGTILVTGTPEDVAAHPASYTGQFLAKMLPSVSARPERPAAVANKPDA
RPPRKAKPEKPAKVAKKAVAAKRATTPSKTSPAKTTKAKKK
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggatttcatccgcatccgcggcgcgcggacgcacaacctcaagaacatcgat
ctcgacctgccccgcgacaagttgatcgtcattaccggcctgtccggctcgggcaagtcc
tcgctggccttcgacacgatctacgccgaaggccagcgccgctacgtggagtccctgtcg
gcctatgcccgccagttcctgagcgtgatggaaaagccggacctggatcatatcgaaggc
ctgtcgccggcgatctccatcgagcagaagtcgacctcgcacaacccgcgttcgaccgtg
ggcaccatcaccgagatctacgactacctgcgcctgctgtatgcccgcgtgggcagcccg
cgctgccccgaccacggctacccgctggaagcgcagaccgtgagccagatggtggaccac
gtgctgaccctggacccggaacagcgctacatgctgctggccccggtgatccgcgaacgc
aagggcgagcatgcccaggtgttcgaccagctgcgcgcgcagggcttcgtgcgcgtgcgg
gtggacggtgcgctgcatgaaatcgatgcggtgccgccgctggcgctgcgccagaagcac
accatcgaagcggtgatcgaccgcttccgcccgcgcgaggacatcaagcagcgcctggcc
gaaagctttgaaaccgcgctgaagctgggcgacggcatggtctcggtgcagtcgctggat
gtcgaggatgccccggcccacctgttctcgtccaagtacagctgcccggtctgcgattac
tcgctgccggagctggaaccgcgcctgttctcgttcaattcgccggtgggcgcctgcccg
ggctgcgatggcctgggcatggccgaattcttcgatccctcgcgcgtggtggtgcacccc
gagctctcgctgtcggccggtgccgtgcgcggctgggaccgccgcaatgcgtactacttc
cagctgatcgcctcgctcgccaagcactacaagttcgacaccgacgcgccgtggcagagc
ctgtccgagccggtgcgcaaggcggtgctgtacggcagcggcgatgaaaccatcaccttc
acctatttcaccgaagccggtggccgcacccagcgcaagcaccgcttcgagggcatcatt
ccgaacctggaacgccgctacaaggaaaccgaatcggcggcggtgcgcgaagagctggcc
aagtacatcagcgaacgcaactgccccgaatgccagggccagcgtctgaaccgcgccgcg
cgcaacgtgttcgtggccgaccgcgcgctgccggaactggtggtgctgccgatcgatgag
gcgctgaagttcttcagcggcatgaccctgcccggctggcgcggcgagatcgccggcaag
atcgtcaaggagatcggcgagcgcctgggcttcctggtcgacgtgggcctggattacctc
acgctggagcgcaaggccgacaccctgtccggtggcgaagcccagcgcatccgcctggcc
agccagatcggcgccggcctggtcggggtgatgtacgtgctcgacgagccctccatcggc
ctgcaccagcgcgacaacgagcgcctgctgggcaccctcacccgcctgcgcgacctgggc
aatacggtgatcgtggtcgagcatgacgaagatgcgatccgcctggccgactacgtgctg
gacatcggtccgggcgccggcgtgcacggcggcgaaatcgtcggccagggcaccctgcag
gacatcctggacgcgccgcgttcgctcaccggccagtacctgtcgggcaagcgtgcgatc
gagattcccgcgcgccggcacaagccgaacccgaagatgacgctgcacctgcgcggcgcc
agcggcaacaacctcaagggcgtggacctggacattccgtcgggcctgctgacctgcatc
accggtgtgtccggttcgggcaagtcgaccctgatcaacgacaccctgttctcgctggcc
gccaacgagatcaacggctcctcgcacccgatcgcgccgtacaaggacgtggaaggcctg
gacctgttcgacaaggtggtggacatcgaccagtcgccgatcggccgcaccccgcgttcg
aacccggccacctacaccggcctgttcaccccgctgcgcgagctgtatgcgcaggtgccc
gaagcacgtgcgcgcggctattcgccgggccgtttcagcttcaacgtacgcggcggccgc
tgcgaagcgtgccagggggatggcctgatcaaggtggaaatgcacttcctgccggacgtg
tacgtgccctgcgatgtgtgccacggcaagcgctacaaccgcgaaacgctggagatcctg
tacaagggctacaacatcaacgacgtgctgcagatgaccgtcgaagatgcgctgaagctg
ttcgaaccggtgccgagcatcgcgcgcaagctggaaacgctggtggacgtgggcctgagc
tatatcaagctgggccagagcgcgaccacgctgtccggtggtgaagcgcagcgtgtgaag
ctgtccaaggagctgtcgcgccgcgataccgggcgcacgctgtacatcctggacgagccg
accaccggcctgcacttccacgacatcgaagcgctgctgggcgtgctgcacaagctgcgc
gacgaaggcaacacggtggtggtgatcgaacacaacctggacgtgatcaagaccgcggac
tggatcgtcgacctggggccggaaggtggccaccgcggcggcaccatcctggtcaccggc
acgcccgaggacgtggccgcgcacccggcgtcgtacaccggccagttcctggccaagatg
ctgccctcggtcagcgcgcgcccggaacgcccggccgcggtggccaacaagcccgacgcc
cgcccgccgcgcaaggccaagccggaaaagccggccaaggtggccaagaaggcggtggcc
gccaagcgcgccaccacccccagcaagaccagccctgccaagaccacgaaggcgaagaag
aagtaa
DBGET
integrated database retrieval system
