Stenotrophomonas rhizophila: BAY15_1347
Help
Entry
BAY15_1347 CDS
T04500
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAY15_1347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srh03019
]
BAY15_1347
03009 Ribosome biogenesis [BR:
srh03009
]
BAY15_1347
Enzymes [BR:
srh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BAY15_1347
Messenger RNA biogenesis [BR:
srh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BAY15_1347
Ribosome biogenesis [BR:
srh03009
]
Prokaryotic type
rRNA helicases
BAY15_1347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOA71781
LinkDB
All DBs
Position
1531521..1533485
Genome browser
AA seq
654 aa
AA seq
DB search
MSQESPTPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNLDFNQTKPQVLVLAPTRELAIQVAEAFQTYSSGIPGFRVLPVYGGQPYGQ
QLQALRRGVHVIVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PETRQVALFSATMPSQIRRIAQTYLKNPAEVTIVSKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFSRTKAATEELAEKLQARGLAAAAINGDMQQAQRERTIGMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFATPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRINKFMSRISDALDAGGTEFYRDLLQKLEGEKNVP
AIEIAAALAKLLQGDSPFLLTPPVRGAREERAPHPRADRNDRGERPARFEPRFERGPRRE
DDRGPRPPRPEGDFGGNDGGFERAPRREIAPRGEPEPGMETFRIEVGHVHGVKPGNIVGA
IANEAGLESRFIGRIDIRDDFSILDLPAEMPADLLSHLKKVWVSGQQLQMRKVEPGEDTA
GSGSARPPFKPKFGRGGKPGGPGGHRGPGGPGGPGGNDRPPRRDGFKPRGPRNG
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaatcccccacgccgctgctcttcgcagacctcggcctgtccgacgctgtg
atgaaggccgttgccgccgtcggctatgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccagaccggcaccggcaagacc
gccgccttcgcgctgccggtcctgtccaacctggatttcaaccagaccaagccgcaggtg
ctggtgctggcgcccacccgcgaactggccatccaggtcgccgaggcgttccagacctac
tcgtcgggcatccccggtttccgcgtgctgccggtctacggcggccagccgtacggccag
cagctgcaggccctgcgccgtggcgtgcacgtcatcgtgggcaccccgggccgcgtgatc
gatcacctcgatcgcggcaccctggacctgtccgagctgaagaccctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaagccgtgctgaagaagctg
ccggaaacccgccaggtcgcgctgttctcggccaccatgccgtcgcagatccgccgcatc
gcgcagacctacctgaagaacccggccgaagtcaccatcgtcagcaagaccaccacgtcg
gccaacatccgccagcgttactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtggaaccgttcgacgcgatgatcatcttctcgcgcaccaaggcggcc
accgaagaactggcggaaaagctgcaggcccgtggcctggccgctgccgccatcaacggc
gacatgcagcaggcgcagcgtgagcgcaccatcggcatgctgaaggaaggcaagctggac
atcctggtggccaccgacgtggccgcgcgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcaccggcgatgcgatcctgttcgccaccccgcgcgaaaagggcatgctg
cgtgcgatcgagcgcgccacccgccagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgacacccgcatcaacaagttcatgagccgcatcagcgatgcgctcgatgcc
ggcggcaccgagttctaccgcgacctgctgcagaagctggaaggcgagaagaacgtgccg
gcgatcgagatcgccgccgcgctggccaagctgctgcagggcgattcgccgttcctgctg
accccgccggtgcgtggtgcccgtgaagagcgtgcgccgcacccgcgtgccgaccgcaac
gaccgtggcgagcgcccggcgcgtttcgaaccgcgcttcgagcgtggcccgcgccgtgaa
gacgaccgcggcccgcgtccgccgcgtccggaaggcgatttcggcggcaacgacggtggc
ttcgaacgtgcgccgcgccgtgaaatcgccccgcgtggcgagccggaacccggcatggaa
accttccgtatcgaagtgggccatgtgcacggggtcaagccgggcaacatcgtcggcgcg
atcgccaatgaagccgggctggaaagccgcttcatcggccgcatcgacatccgtgacgac
ttctcgatcctggatcttccggcggaaatgccggccgacctgctcagccacctgaagaag
gtgtgggtgtcgggccagcagctccagatgcgcaaggtcgagccgggtgaagacaccgca
ggctcgggctcggcacgcccgccgttcaagccgaagttcggccgcggcggcaagccgggc
ggtccgggtggtcaccgtggcccgggtggtccgggtggtccgggcggcaacgaccgtccg
ccgcgtcgtgacggcttcaagccgcgcggtccgcgcaacggctga
DBGET
integrated database retrieval system
